Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11k03f
         (667 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0023 - 19325966-19326046,19326132-19326248,19326635-193267...    33   0.27 
03_02_0523 + 9112577-9112608,9112626-9113251,9113696-9113747,911...    31   1.1  
05_03_0376 - 13252220-13252354,13252433-13252541,13253279-132533...    30   1.9  
05_01_0493 + 4113869-4116728,4116859-4117370                           30   1.9  
06_02_0072 + 11152988-11153102,11153581-11153705,11153860-111540...    29   2.5  
03_06_0035 - 31201115-31203646                                         29   3.3  
09_06_0347 + 22445962-22446154,22446495-22446616,22446764-224468...    29   4.4  
01_06_0036 + 25786530-25786756,25788000-25788076,25788538-257886...    28   7.7  

>11_06_0023 -
           19325966-19326046,19326132-19326248,19326635-19326703,
           19326922-19327119,19327388-19327591,19327688-19327828,
           19328416-19328625,19329330-19329944
          Length = 544

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 18/79 (22%), Positives = 37/79 (46%)
 Frame = +3

Query: 282 VKDAFLTSGDYNVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLNKVHIVGFN 461
           ++D    + D NV    +   +L   + A +A   +   IA +LKN KL ++++ +    
Sbjct: 379 MQDVLFLANDDNV--ARFFDSTLEHGADAKLAANWIMGDIAAYLKNEKLSIDEIKLTPLE 436

Query: 462 LGAHVAGVTGRNLEGKVAR 518
           L   +A +    + GK+ +
Sbjct: 437 LSELIASIRNGTISGKIGK 455


>03_02_0523 +
           9112577-9112608,9112626-9113251,9113696-9113747,
           9114713-9114782
          Length = 259

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 27/133 (20%), Positives = 57/133 (42%), Gaps = 1/133 (0%)
 Frame = +3

Query: 81  DAIQNLERFGSLNKYYYYSNAQRNSITLTEDHFPTGNDTAAPFNNNSDIVVIIHGHSGTA 260
           D+I  +E    L    + S++  N+I+   D F +         ++ D+  + + H G  
Sbjct: 100 DSINGIESHKMLKVQAFSSSSSSNNIS--SDAFTSSRSNGTKDTDSWDMQHLEYDHPGLM 157

Query: 261 TTTINPIVKDAFLTSGDYNVIVV-DWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLN 437
               +  +++A+   G Y+V++  D +S  +   +  V+      + I   L  L    N
Sbjct: 158 LLPYDDDIEEAYDVLGQYDVVMKNDLASGDVDGSAAGVIDEKLYSNGIEDLL-ILPRGQN 216

Query: 438 KVHIVGFNLGAHV 476
            +H+V  N+  H+
Sbjct: 217 SIHVVYANIVCHL 229


>05_03_0376 -
           13252220-13252354,13252433-13252541,13253279-13253337,
           13253608-13253700,13254078-13254153,13254405-13254467,
           13254535-13254629,13254743-13254845,13254930-13255024,
           13255098-13255156,13255445-13255656,13256090-13256222,
           13256691-13257081
          Length = 540

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 54  AIAFAACNGDAIQNLERFGSLNKYYYYSNAQRNSITLTEDHFP 182
           A  F + +  ++++  R   L+K +  SNA+   I +TED FP
Sbjct: 216 AQGFDSQSSSSVKSSTRDEKLHKSFQISNAENEQILVTEDDFP 258


>05_01_0493 + 4113869-4116728,4116859-4117370
          Length = 1123

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/42 (42%), Positives = 20/42 (47%)
 Frame = +3

Query: 33  LKLITLLAIAFAACNGDAIQNLERFGSLNKYYYYSNAQRNSI 158
           LK +T LAI  A  +G     L R G L   Y Y NA   SI
Sbjct: 244 LKNLTTLAIYTALLSGPIPPELGRCGCLENIYLYENALSGSI 285


>06_02_0072 +
           11152988-11153102,11153581-11153705,11153860-11154004,
           11154219-11154284,11154418-11154540,11154839-11154961,
           11156065-11156193,11156510-11156632,11156737-11156838,
           11156943-11157065,11157169-11157270,11157370-11157492,
           11157791-11157913,11158209-11158331,11158633-11158761,
           11160210-11161039
          Length = 867

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 120 YLNFQIAPSFEWHLRCKRQMRWPT 49
           Y++F + P   W++ CK +M W T
Sbjct: 61  YIDFIVCPLAVWNIVCKERMNWAT 84


>03_06_0035 - 31201115-31203646
          Length = 843

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
 Frame = +3

Query: 156 ITLTEDHFPTGNDTAAPFNNNSDIVVIIHGHSGTATTTINPIVKDAFL-TSGD 311
           + + +DH+   N T A F+ ++D +V++H  S  AT   NP++++  + T GD
Sbjct: 125 LPIPDDHY---NLTTATFSVSTDDMVLLHDFSFIATPP-NPVLREYIVATQGD 173


>09_06_0347 +
           22445962-22446154,22446495-22446616,22446764-22446885,
           22447405-22447594,22447874-22448014,22448257-22448724,
           22448842-22449609,22450185-22450373
          Length = 730

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = +2

Query: 500 GRQSSKNYGSR--PFGS*LGKQ-RTTTGNKRCSIR*SYSHRRIWCQQNGW 640
           G    K+Y  +  PFG  + +  R +  + +CS+  S S   IWC  N W
Sbjct: 137 GAADDKHYTKKAAPFGHDVMQDCRQSATSAQCSVERSSSLSEIWCVSNTW 186


>01_06_0036 +
           25786530-25786756,25788000-25788076,25788538-25788625,
           25788706-25788786,25788866-25788940,25789048-25789149,
           25789589-25789726,25791559-25791585,25791696-25791786,
           25792423-25792584
          Length = 355

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 36/155 (23%), Positives = 61/155 (39%), Gaps = 3/155 (1%)
 Frame = +3

Query: 24  RKMLKLITLLAIAFAACNGDAIQNLERFGSLNKYYYYSNAQRNSITLTEDHFPTGN-DTA 200
           R M +L+ L   A     G  +Q L  F ++  YY++S+  R SI   E   P    D  
Sbjct: 80  RWMSQLLALTIYAILLMPG-FLQVLSWF-TVGYYYFFSSQVRRSIVYGEQ--PRNRLDLY 135

Query: 201 AP--FNNNSDIVVIIHGHSGTATTTINPIVKDAFLTSGDYNVIVVDWSSFSLSTYSTAVM 374
            P   N    +V  + G +          +    L      V  +D+ +F   T    V 
Sbjct: 136 IPKDINRPCPVVAFVTGGAWIIGYKAWGSLLGRRLAERGIIVACIDYRNFPQGTIGDMVS 195

Query: 375 AVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVA 479
             +   S +   + +     N++++VG + GAH+A
Sbjct: 196 DASQGISYVCNNIASYGGDPNRIYLVGQSAGAHIA 230


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,868,338
Number of Sequences: 37544
Number of extensions: 364320
Number of successful extensions: 997
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)