Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11k02r
         (554 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g36890.1 68418.m04419 glycosyl hydrolase family 1 protein pco...    30   1.2  
At4g16430.1 68417.m02487 basic helix-loop-helix (bHLH) family pr...    29   2.1  
At3g02270.1 68416.m00208 eIF4-gamma/eIF5/eIF2-epsilon domain-con...    29   2.1  
At2g34970.1 68415.m04291 eIF4-gamma/eIF5/eIF2-epsilon domain-con...    27   6.4  
At4g18300.1 68417.m02715 eIF4-gamma/eIF5/eIF2-epsilon domain-con...    27   8.4  

>At5g36890.1 68418.m04419 glycosyl hydrolase family 1 protein
           pcontains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; similar to amygdalin hydrolase isoform AH I
           precursor (GI:16757966) [Prunus serotina]; prunasin
           hydrolase isoform PHA precursor, Prunus serotina,
           EMBL:AF221526
          Length = 490

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
 Frame = -2

Query: 262 GAGNDDYYLGGGFNPGKRCVNMWD-----EGCINDQINGAGNDDYY 140
           G     Y + GG+N GK+  ++WD     EG I D  NG    D+Y
Sbjct: 28  GVATSAYQIEGGWNEGKKGPSIWDKFTHIEGKILDGSNGDVAVDHY 73


>At4g16430.1 68417.m02487 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 467

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = -2

Query: 361 GSGWDD--YYLNGNFNPGKRCLNMWDDGCANGQLPGAGNDDY 242
           GS WD   ++L  N N    C+ +W DG    +  GA  +DY
Sbjct: 60  GSDWDYALFWLASNVNSSDGCVLIWGDGHCRVK-KGASGEDY 100


>At3g02270.1 68416.m00208 eIF4-gamma/eIF5/eIF2-epsilon
           domain-containing protein similar to SP|Q13144
           Translation initiation factor eIF-2B epsilon subunit
           (eIF-2B GDP-GTP exchange factor) {Homo sapiens};
           contains Pfam profile PF02020:
           eIF4-gamma/eIF5/eIF2-epsilon
          Length = 676

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 167 DLIIDAAFVPHVDTTLAWIESTAEVIVIVACS 262
           ++++    +P +D TLAW+ES     V V CS
Sbjct: 47  NVLLPLVNIPMIDYTLAWLESAGIEEVFVFCS 78


>At2g34970.1 68415.m04291 eIF4-gamma/eIF5/eIF2-epsilon
           domain-containing protein similar to SP|Q64350
           Translation initiation factor eIF-2B epsilon subunit
           (eIF-2B GDP-GTP exchange factor) {Rattus norvegicus};
           contains Pfam profile PF02020:
           eIF4-gamma/eIF5/eIF2-epsilon
          Length = 730

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 191 VPHVDTTLAWIESTAEVIVIVAC 259
           VP +D TLAW+ES     V V C
Sbjct: 55  VPMIDYTLAWLESAGIEEVFVFC 77


>At4g18300.1 68417.m02715 eIF4-gamma/eIF5/eIF2-epsilon
           domain-containing protein similar to SP|Q64350
           Translation initiation factor eIF-2B epsilon subunit
           (eIF-2B GDP-GTP exchange factor) {Rattus norvegicus};
           contains Pfam profile PF02020:
           eIF4-gamma/eIF5/eIF2-epsilon
          Length = 709

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 191 VPHVDTTLAWIESTAEVIVIVAC 259
           +P +D TLAW+ES     V V C
Sbjct: 54  IPMIDYTLAWLESAGIEEVFVFC 76


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,000,478
Number of Sequences: 28952
Number of extensions: 279032
Number of successful extensions: 626
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)