Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11k02f
         (589 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch...    25   6.2  
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch...    25   6.2  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   8.2  
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    25   8.2  

>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 216

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 200 GWDDYYLNGNFNPGKRCLNMWDDGCANGQLPGAGNDDYYLGG 325
           G + + L+ + N G+ C N+WD   A  +  G   D YY+ G
Sbjct: 43  GVEVHPLHFHTNFGEICFNVWD--TAGQEKLGGLRDGYYIQG 82


>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
           Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1001

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/36 (27%), Positives = 23/36 (63%)
 Frame = -2

Query: 522 MFSLNRQSFYNLGFVLCSFLNNSITERLPGLKPLFK 415
           +  +N+ S  +LG ++C+ L+  +T  +P  +P+F+
Sbjct: 212 LVDINQASGSDLG-IICNALSRILTSNIPTSEPIFE 246


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 134  YGDRRCVNMWDEGCINGQLPGSGWDDYYLNGNFN 235
            Y DR CV   D+  I   L  S W+ +  + N++
Sbjct: 1101 YLDRNCVTCSDKHVIISLLLVSSWEKFLTSNNYS 1134


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 297 QATMTITSAVDSIQASVVSTCGTKA 371
           Q   T+ S V  I   ++S CGTK+
Sbjct: 336 QENTTLRSKVQDILLRIISVCGTKS 360


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,347,043
Number of Sequences: 5004
Number of extensions: 50154
Number of successful extensions: 95
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)