Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11k02f
         (589 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0504 - 8976973-8979414                                           32   0.39 
04_03_0941 - 20950190-20951088,20952436-20952478,20952580-209526...    31   0.68 
03_02_0091 + 5574528-5577254                                           31   0.90 
04_03_0380 - 15150814-15152304                                         30   1.6  
04_03_0348 + 14735581-14737071                                         30   1.6  
06_01_0198 + 1529190-1530371                                           27   8.4  

>03_02_0504 - 8976973-8979414
          Length = 813

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 224 GNFNPGKRCLNMWDDGCANG-QLPGAGNDDY 313
           G+F P KRCL  W  G  +G Q+PG   +D+
Sbjct: 240 GSFQPAKRCLPPWSLGVLDGEQVPGRVFEDF 270



 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +2

Query: 323 GGFNPGKRCVNMWDEGCIN-DQINGAGNDDY 412
           G F P KRC+  W  G ++ +Q+ G   +D+
Sbjct: 240 GSFQPAKRCLPPWSLGVLDGEQVPGRVFEDF 270


>04_03_0941 -
           20950190-20951088,20952436-20952478,20952580-20952606,
           20953189-20953301,20953872-20954715,20955740-20955790,
           20956026-20956126,20956205-20956244,20956360-20957124
          Length = 960

 Score = 31.1 bits (67), Expect = 0.68
 Identities = 20/67 (29%), Positives = 28/67 (41%)
 Frame = +2

Query: 134 YGDRRCVNMWDEGCINGQLPGSGWDDYYLNGNFNPGKRCLNMWDDGCANGQLPGAGNDDY 313
           YG     N  +   + G    SG DDY   G +N         DD  ++G    +G D+Y
Sbjct: 723 YGSTGSYNKSNTDDLTGGFNKSGTDDYSGGGGYNKSGA-----DDYSSSGGYSKSGTDNY 777

Query: 314 YLGGGFN 334
              GG+N
Sbjct: 778 SGSGGYN 784


>03_02_0091 + 5574528-5577254
          Length = 908

 Score = 30.7 bits (66), Expect = 0.90
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +3

Query: 237 PASGALICGMTAVPMDNYPEQATMTITSAVDSIQASVVSTCG 362
           P+SGA++   T V M+ Y E+A     + +D   A VV+ CG
Sbjct: 142 PSSGAMVVPSTVVGMEGYLEEA----LACLDDRDAGVVAICG 179


>04_03_0380 - 15150814-15152304
          Length = 496

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
 Frame = -1

Query: 364 VPHVDTTLAWIESTAEV---IVIVACSG*LSIGTAVIPHIKAPLAGIKVTIQIIVIPTRS 194
           +PH+D  LA I + A     +  V C G +S        I  P A +       ++  R 
Sbjct: 101 LPHLDALLATINADAAAAPPVTCVVCDGVMSFAYDAARRIGVPCAALWTASACGLMGYRH 160

Query: 193 WKLSIDTALIPHVDTAAIS 137
           ++  ++  L+P  D A ++
Sbjct: 161 YRHLVERGLVPLRDAAQLT 179


>04_03_0348 + 14735581-14737071
          Length = 496

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
 Frame = -1

Query: 364 VPHVDTTLAWIESTAEV---IVIVACSG*LSIGTAVIPHIKAPLAGIKVTIQIIVIPTRS 194
           +PH+D  LA I + A     +  V C G +S        I  P A +       ++  R 
Sbjct: 101 LPHLDALLATINADAAAAPPVTCVVCDGVMSFAYDAARRIGVPCAALWTASACGLMGYRH 160

Query: 193 WKLSIDTALIPHVDTAAIS 137
           ++  ++  L+P  D A ++
Sbjct: 161 YRHLVERGLVPLRDAAQLT 179


>06_01_0198 + 1529190-1530371
          Length = 393

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 281 GQLPGAGNDDYYLGGGFNPGKRCVNMWDEGCINDQI 388
           G   G+GN     GGG   GK   + +DEG  + Q+
Sbjct: 63  GAAAGSGNPKQQRGGGGGGGKAAASPFDEGSNSAQL 98


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,331,761
Number of Sequences: 37544
Number of extensions: 372843
Number of successful extensions: 775
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)