Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11k02f
(589 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41690| Best HMM Match : DSL (HMM E-Value=0) 44 1e-04
SB_1902| Best HMM Match : Paramecium_SA (HMM E-Value=1.4) 36 0.019
SB_54070| Best HMM Match : Phage_integr_N (HMM E-Value=0.041) 33 0.17
SB_35581| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.53
SB_59007| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.70
SB_20263| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.70
SB_55470| Best HMM Match : Nucleoplasmin (HMM E-Value=4.8) 30 1.2
SB_13376| Best HMM Match : DUF1213 (HMM E-Value=0.18) 30 1.2
SB_53810| Best HMM Match : DUF1542 (HMM E-Value=3.9) 30 1.2
SB_59201| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_3828| Best HMM Match : Tetraspannin (HMM E-Value=6.7e-08) 29 2.8
SB_13651| Best HMM Match : I-set (HMM E-Value=4e-17) 29 3.7
SB_57608| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_9163| Best HMM Match : XS (HMM E-Value=0.84) 28 4.9
SB_3972| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_1489| Best HMM Match : Pentapeptide_2 (HMM E-Value=0.77) 28 6.5
SB_53084| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_52043| Best HMM Match : Collagen (HMM E-Value=0.77) 27 8.6
SB_33199| Best HMM Match : Collagen (HMM E-Value=0.77) 27 8.6
SB_28657| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_26532| Best HMM Match : Hep_Hag (HMM E-Value=9.9e-26) 27 8.6
SB_30249| Best HMM Match : Extensin_2 (HMM E-Value=0.035) 27 8.6
SB_24036| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_18156| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_16648| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
>SB_41690| Best HMM Match : DSL (HMM E-Value=0)
Length = 2798
Score = 43.6 bits (98), Expect = 1e-04
Identities = 34/121 (28%), Positives = 50/121 (41%), Gaps = 5/121 (4%)
Frame = +2
Query: 110 SFGHH--PATYGDRRCVNMWDEGCINGQLPGSGWDD--YYLNGNFNPGKRCLNMWDDG-C 274
S GH+ T G+R C++ W G S D YY NG N + CL+ W G C
Sbjct: 1799 SDGHYYCNGTNGERICLDDWYGGNCTTYCKSSNGSDGHYYCNGT-NGERICLDDWYGGNC 1857
Query: 275 ANGQLPGAGNDDYYLGGGFNPGKRCVNMWDEGCINDQINGAGNDDYYLNNGFNPGKRSVI 454
G+D +Y G N + C++ W G + YY + + GKR +
Sbjct: 1858 TTYCKSSNGSDGHYYCNGTNGERICLDDWYGGNCTTYCKSSNGSYYYCKH--DSGKRVCL 1915
Query: 455 E 457
+
Sbjct: 1916 D 1916
>SB_1902| Best HMM Match : Paramecium_SA (HMM E-Value=1.4)
Length = 129
Score = 36.3 bits (80), Expect = 0.019
Identities = 29/87 (33%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Frame = +2
Query: 149 CVNMWDEGCINGQLPGSGWDDYYLNGNFNPGKR-CLNMWDDGCANGQLPGAGNDDYYLGG 325
C NM +GC N + G + +G N K C NM DGC N N G
Sbjct: 38 CTNMVTDGCTN--MVKDGCTNMVTDGCTNMVKDGCTNMVKDGCTNMVKDECTN--MVKDG 93
Query: 326 GFNPGKR-CVNMWDEGCINDQINGAGN 403
N K C NM +GC N + +G N
Sbjct: 94 CTNMVKHGCTNMVTDGCTNMETDGCTN 120
Score = 33.5 bits (73), Expect = 0.13
Identities = 28/86 (32%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
Frame = +2
Query: 149 CVNMWDEGCINGQLPGSGWDDYYLNGNFNPGK-RCLNMWDDGCANGQLPGAGNDDYYLGG 325
C NM +GC N + G + +G N K C NM DGC N G N +
Sbjct: 54 CTNMVTDGCTN--MVKDGCTNMVKDGCTNMVKDECTNMVKDGCTNMVKHGCTN---MVTD 108
Query: 326 GFNPGKRCVNMWDEGCINDQINGAGN 403
G C NM +GC N +G N
Sbjct: 109 G------CTNMETDGCTNMVTDGCTN 128
Score = 30.7 bits (66), Expect = 0.92
Identities = 20/53 (37%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Frame = +2
Query: 248 CLNMWDDGCANGQLPGAGNDDYYLGGGFNPGKR-CVNMWDEGCINDQINGAGN 403
C NM DGC N G N G N K C NM +GC N +G N
Sbjct: 6 CTNMVKDGCTNMVKDGCNN--MVTDGCTNMVKHGCTNMVTDGCTNMVKDGCTN 56
>SB_54070| Best HMM Match : Phage_integr_N (HMM E-Value=0.041)
Length = 988
Score = 33.1 bits (72), Expect = 0.17
Identities = 29/116 (25%), Positives = 59/116 (50%)
Frame = -1
Query: 448 GTFAWIEAVVQIIVIVTGSIDLIIDAAFVPHVDTTLAWIESTAEVIVIVACSG*LSIGTA 269
G+F I A+ IIVI SI +I + + ++ I + ++ +AC ++I +
Sbjct: 256 GSFIVI-AIASIIVIAIASIIVIAIVSIIVIAIASIIVIAIASIFVIAIACFSVIAIASI 314
Query: 268 VIPHIKAPLAGIKVTIQIIVIPTRSWKLSIDTALIPHVDTAAISISSGVMAKAL*T 101
++ I A + I + + IIVI T S ++I + ++ + + + + V+A A+ T
Sbjct: 315 IVIAI-ASIFVIAI-VSIIVIATASIVIAIASIIVIAIASFIVIAIARVVASAIAT 368
>SB_35581| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 275
Score = 31.5 bits (68), Expect = 0.53
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +2
Query: 131 TYGDRRCVNMWDEGCINGQLPGSGWDDYYLNG-NFNP-GKRCLNMWDDGCANGQLPGAGN 304
TY + + EG + +PG G Y G ++ P G R L+ W G + +PG G
Sbjct: 15 TYLEEGVITYLKEG--DHYIPGGGTITYLEEGEHYIPRGGRPLHTWRRG--DHYIPGGGG 70
Query: 305 DDYYLGGG 328
D Y GGG
Sbjct: 71 DSYIPGGG 78
>SB_59007| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 75
Score = 31.1 bits (67), Expect = 0.70
Identities = 21/58 (36%), Positives = 27/58 (46%)
Frame = +2
Query: 263 DDGCANGQLPGAGNDDYYLGGGFNPGKRCVNMWDEGCINDQINGAGNDDYYLNNGFNP 436
DDG G G G+DD G G N D+G ++ G DD+ +N GFNP
Sbjct: 22 DDGGGGGS--GEGDDDDGGCGDDEDGGGGEN--DDGGVDVGDGGGDGDDWAINGGFNP 75
>SB_20263| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 226
Score = 31.1 bits (67), Expect = 0.70
Identities = 26/81 (32%), Positives = 33/81 (40%), Gaps = 5/81 (6%)
Frame = +2
Query: 206 DDYYLNGNFNP---GKRCLNM--WDDGCANGQLPGAGNDDYYLGGGFNPGKRCVNMWDEG 370
D+Y NGN + G C N +D+ NG NDD Y N + D
Sbjct: 20 DNYDNNGNNDSNDNGDNCDNNDNYDNNDNNGNNDNNDNDDNYDNNDNNDNNDNNDNNDNN 79
Query: 371 CINDQINGAGNDDYYLNNGFN 433
ND + N+D Y NNG N
Sbjct: 80 DNNDNNDNNDNNDNYDNNGNN 100
Score = 29.9 bits (64), Expect = 1.6
Identities = 22/83 (26%), Positives = 31/83 (37%)
Frame = +2
Query: 161 WDEGCINGQLPGSGWDDYYLNGNFNPGKRCLNMWDDGCANGQLPGAGNDDYYLGGGFNPG 340
+D NG + DD Y N + N + D+ N N+D Y G N
Sbjct: 43 YDNNDNNGNNDNNDNDDNYDNNDNNDNNDNNDNNDNNDNNDNNDNNDNNDNYDNNGNNDN 102
Query: 341 KRCVNMWDEGCINDQINGAGNDD 409
N +D ND + GN+D
Sbjct: 103 NDNYNNYDNNGNNDSNDNNGNND 125
>SB_55470| Best HMM Match : Nucleoplasmin (HMM E-Value=4.8)
Length = 230
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/47 (44%), Positives = 22/47 (46%)
Frame = +2
Query: 263 DDGCANGQLPGAGNDDYYLGGGFNPGKRCVNMWDEGCINDQINGAGN 403
DD NG G NDDYY GG C DEG ND+ NG N
Sbjct: 186 DDDNDNG---GGDNDDYYKDGGDEDDNDC----DEGVENDE-NGKEN 224
>SB_13376| Best HMM Match : DUF1213 (HMM E-Value=0.18)
Length = 1022
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/47 (44%), Positives = 22/47 (46%)
Frame = +2
Query: 263 DDGCANGQLPGAGNDDYYLGGGFNPGKRCVNMWDEGCINDQINGAGN 403
DD NG G NDDYY GG C DEG ND+ NG N
Sbjct: 978 DDDNDNG---GGDNDDYYKDGGDEDDNDC----DEGVENDE-NGKEN 1016
>SB_53810| Best HMM Match : DUF1542 (HMM E-Value=3.9)
Length = 560
Score = 30.3 bits (65), Expect = 1.2
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +2
Query: 197 SGWDDYYLNGNFNPGKRCLNMWDDGCANGQLPGAGNDDYYLGGGFNPGKRCVNMWDEGCI 376
+G DD +NG+++ +N DD NG DD + GG + N D+ I
Sbjct: 97 NGGDDDDINGDYDADDEDINGGDDDDINGDYDA---DDEDINGGDDDDINGDNDADDENI 153
Query: 377 NDQINGAGND-DYYLNN 424
N + A +D D Y+N+
Sbjct: 154 NSDNDAADDDADDYVNS 170
>SB_59201| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1326
Score = 29.9 bits (64), Expect = 1.6
Identities = 21/108 (19%), Positives = 52/108 (48%), Gaps = 7/108 (6%)
Frame = -1
Query: 421 VQIIVIVTGSIDLIIDAAFVPHVDTTLAWIESTAEVIVIVACSG*----LSIGTAVIPHI 254
V+ +V+ ++D+ +D V VDT L +++ + +G + + T V+
Sbjct: 50 VETLVVGVDTLDVGVDTDVVTGVDTLLVGVDTLVVGVDTDVVTGVETLVVGVDTLVVGVD 109
Query: 253 KAPLAGIK---VTIQIIVIPTRSWKLSIDTALIPHVDTAAISISSGVM 119
+ G++ V ++ +V+ + + +DT ++ VDT + + + V+
Sbjct: 110 TDVVTGVETLVVGVETLVVGVETLVVGVDTEVVTGVDTLVVGVDTLVV 157
Score = 29.9 bits (64), Expect = 1.6
Identities = 22/106 (20%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Frame = -1
Query: 424 VVQIIVIVTGSIDLIIDA-AFVPHVDTTLAWIESTAEVIVIVACSG*LSIGTAVIPHIKA 248
VV + +V G L++ FV VDT + + + +V+ + + + T V+ +
Sbjct: 590 VVGVDTLVVGVETLVVGVDTFVVGVDTDVV---TGVDTLVVGVDTFVVGVDTDVVTGVDT 646
Query: 247 PLAGIK---VTIQIIVIPTRSWKLSIDTALIPHVDTAAISISSGVM 119
+ G+ V ++ +V+ ++ + +DT ++ VDT + + + V+
Sbjct: 647 LVVGVDTLVVGVETLVVGVDTFVVGVDTDVVTGVDTLVVGVDTLVV 692
Score = 29.5 bits (63), Expect = 2.1
Identities = 20/108 (18%), Positives = 53/108 (49%), Gaps = 7/108 (6%)
Frame = -1
Query: 421 VQIIVIVTGSIDLIIDAAFVPHVDTTLAWIESTAEVIVIVACSG*----LSIGTAVIPHI 254
V+ +V+ ++ + +D V V+T + +++ + V +G + + T V+ +
Sbjct: 1092 VETLVVGVDTLVVGVDTDVVTGVETLVVGVDTLVVGVDTVVVTGVETLVVGVDTDVVTGV 1151
Query: 253 KAPLAGIK---VTIQIIVIPTRSWKLSIDTALIPHVDTAAISISSGVM 119
+ G+K V ++ +V+ + + +DT ++ VDT + + + V+
Sbjct: 1152 DTLVVGVKTFVVGVETLVVGLDTLVVGVDTDVVTGVDTLVVGVETLVV 1199
Score = 27.5 bits (58), Expect = 8.6
Identities = 18/101 (17%), Positives = 45/101 (44%)
Frame = -1
Query: 421 VQIIVIVTGSIDLIIDAAFVPHVDTTLAWIESTAEVIVIVACSG*LSIGTAVIPHIKAPL 242
V +V+ ++ + +D V VDT + +++ V G ++ V + +
Sbjct: 813 VDTLVVGVETLVVGVDTDVVTGVDTLVVGVDTDVVTGVDTLVVGVDTLVVGVDTDVVTGV 872
Query: 241 AGIKVTIQIIVIPTRSWKLSIDTALIPHVDTAAISISSGVM 119
+ V + +V+ + + +DT ++ VDT + + + V+
Sbjct: 873 DTLVVGVDTLVVGVDTLVVGVDTDVVTGVDTLVVGVDTDVV 913
>SB_3828| Best HMM Match : Tetraspannin (HMM E-Value=6.7e-08)
Length = 542
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -1
Query: 247 PLAGIKVTIQIIVIPTRSWKLSIDTALIPHVD-TAAISISS 128
P +KV + + VIP R K+ + ++IP +D +S+S+
Sbjct: 393 PFRDMKVELSVSVIPFRDMKVELSVSVIPFLDMKVELSVSA 433
Score = 28.7 bits (61), Expect = 3.7
Identities = 25/94 (26%), Positives = 43/94 (45%)
Frame = -1
Query: 433 IEAVVQIIVIVTGSIDLIIDAAFVPHVDTTLAWIESTAEVIVIVACSG*LSIGTAVIPHI 254
+E V +I + ++L + A +P D +E + VI LS+ +VIP
Sbjct: 413 VELSVSVIPFLDMKVELSVSA--IPFRDNENMKVELSVSVIPFRDMKVELSV--SVIP-- 466
Query: 253 KAPLAGIKVTIQIIVIPTRSWKLSIDTALIPHVD 152
+KV + + VIP R K+ + ++IP D
Sbjct: 467 ---FRDMKVKLSVSVIPFRDMKVELSVSVIPFRD 497
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -1
Query: 247 PLAGIKVTIQIIVIPTRSWKLSIDTALIPHVD 152
P +KV + + VIP R K+ + ++IP D
Sbjct: 508 PFRDMKVELSVSVIPFRDMKVELSVSVIPFQD 539
>SB_13651| Best HMM Match : I-set (HMM E-Value=4e-17)
Length = 333
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -1
Query: 301 ACSG*LSIGTAVIPHIKAPLAGIKVTIQIIVIPTRSWKLSIDTA 170
+CSG + I A + H K L I+ + + P+ SW L++ A
Sbjct: 115 SCSGVVEIRNASVVHEKPYLVKIRTSSSSPLSPSASWDLNVKVA 158
>SB_57608| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 321
Score = 28.3 bits (60), Expect = 4.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +2
Query: 146 RCVNMWDEGCINGQLP 193
RC+N W+ GC+ Q P
Sbjct: 110 RCINPWESGCMQAQRP 125
>SB_9163| Best HMM Match : XS (HMM E-Value=0.84)
Length = 424
Score = 28.3 bits (60), Expect = 4.9
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +3
Query: 360 GTKAASMIKSMEPVTMTII*TTASIQANVP*LNCSRNCIK-RNLNCKNFV 506
G+KAAS + S T+T T N+P + RNLNCK F+
Sbjct: 132 GSKAASTVMSTTVTTITTPVETTKSTVNIPTTMAPNPKTELRNLNCKIFL 181
>SB_3972| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 28.3 bits (60), Expect = 4.9
Identities = 22/77 (28%), Positives = 31/77 (40%)
Frame = +2
Query: 197 SGWDDYYLNGNFNPGKRCLNMWDDGCANGQLPGAGNDDYYLGGGFNPGKRCVNMWDEGCI 376
+G Y N + N G + DD G G D+ G N +D+
Sbjct: 31 NGASSYDDNDDDNNGAGSNDNNDDNNGAGSSDGGDYDNNGAGSNDNDDNNGTGSYDDDGD 90
Query: 377 NDQINGAGNDDYYLNNG 427
+D NGAG++D NNG
Sbjct: 91 DDN-NGAGSNDNDDNNG 106
>SB_1489| Best HMM Match : Pentapeptide_2 (HMM E-Value=0.77)
Length = 872
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Frame = +2
Query: 206 DDYYLNGNFNPGKRCLNMWDDG-CANGQLPGAGNDD-YYLGGGFNPGKRCVNMWDEG 370
D YY GN+ G + DG A G +DD Y GG + G + +G
Sbjct: 58 DGYYAGGNYAGGNYTDGNYADGYYAGGNYADGNHDDSNYAGGNYTGGNYADGNYTDG 114
>SB_53084| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 936
Score = 27.9 bits (59), Expect = 6.5
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 263 DDGCANGQLPGAGN-DDYYLGGGFNPGKRCVNMWDEGCINDQINGAGNDD 409
DDG G G G DD GGG + G + D GC D+ +G G DD
Sbjct: 496 DDGDGGGDDDGDGGVDDDGDGGGDDDGDGGGDD-DVGCGCDESSGGGGDD 544
>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1597
Score = 27.5 bits (58), Expect = 8.6
Identities = 22/72 (30%), Positives = 29/72 (40%)
Frame = +2
Query: 224 GNFNPGKRCLNMWDDGCANGQLPGAGNDDYYLGGGFNPGKRCVNMWDEGCINDQINGAGN 403
GN N G + G NG+ G N+ GG N G + G N+ N GN
Sbjct: 482 GNNNGGNNNGGNNNGGNNNGENNGGNNNGGNNNGGNNNGGNNNGGNNNGGNNNGENNGGN 541
Query: 404 DDYYLNNGFNPG 439
++ N G N G
Sbjct: 542 NNGGNNGGSNNG 553
>SB_52043| Best HMM Match : Collagen (HMM E-Value=0.77)
Length = 97
Score = 27.5 bits (58), Expect = 8.6
Identities = 26/72 (36%), Positives = 34/72 (47%)
Frame = +2
Query: 194 GSGWDDYYLNGNFNPGKRCLNMWDDGCANGQLPGAGNDDYYLGGGFNPGKRCVNMWDEGC 373
G G DD N N + G + DDG ANG G GNDD + G + ++G
Sbjct: 11 GGGNDDDGGNDNDDGGGK-----DDG-ANGDDGGGGNDDDGGNDDDDGGGKDDGANNDGG 64
Query: 374 INDQINGAGNDD 409
+D +G GNDD
Sbjct: 65 YDD--DGDGNDD 74
>SB_33199| Best HMM Match : Collagen (HMM E-Value=0.77)
Length = 134
Score = 27.5 bits (58), Expect = 8.6
Identities = 26/72 (36%), Positives = 34/72 (47%)
Frame = +2
Query: 194 GSGWDDYYLNGNFNPGKRCLNMWDDGCANGQLPGAGNDDYYLGGGFNPGKRCVNMWDEGC 373
G G DD N N + G + DDG ANG G GNDD + G + ++G
Sbjct: 51 GGGNDDDGGNDNDDGGGK-----DDG-ANGDDGGGGNDDDGGNDDDDGGGKDDGANNDGG 104
Query: 374 INDQINGAGNDD 409
+D +G GNDD
Sbjct: 105 YDD--DGDGNDD 114
>SB_28657| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3296
Score = 27.5 bits (58), Expect = 8.6
Identities = 19/57 (33%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Frame = +2
Query: 200 GWDDYYLNGNFNP-GKRCLNMWDDGCANGQLPGAGNDDYYLGGGFNPGKRCVNMWDE 367
GW D +NG KRC D NGQ+ G YLG N R +E
Sbjct: 2137 GWVDMIVNGQVEGIDKRCKVGLVDMIVNGQIEGIDKGCKYLGKTQNSWHRAALTLEE 2193
>SB_26532| Best HMM Match : Hep_Hag (HMM E-Value=9.9e-26)
Length = 810
Score = 27.5 bits (58), Expect = 8.6
Identities = 21/97 (21%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
Frame = -1
Query: 406 IVTGSIDLIIDA-AFVPHVDTTLAWIESTAEVIVIVACSG*LSIGTAVIPHIKAPLAGIK 230
+VTG L++ V VDT + T V V G ++ V+ + + +
Sbjct: 347 VVTGVDTLVVGVETLVVGVDTDVVTGVETLVVGVETLVVGVDTLVVGVVTDVVTGVETLV 406
Query: 229 VTIQIIVIPTRSWKLSIDTALIPHVDTAAISISSGVM 119
V + +V+ + + +DT ++ VDT + + + V+
Sbjct: 407 VGVDTLVVGVDTLVVGVDTDVVTGVDTFVVGVETFVV 443
>SB_30249| Best HMM Match : Extensin_2 (HMM E-Value=0.035)
Length = 624
Score = 27.5 bits (58), Expect = 8.6
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Frame = +2
Query: 152 VNMWDEGCINGQLPGSGWDDYYLNG-NFNPGKRCLNMWDDGCANGQLPGAGNDDYYLGGG 328
+N++ + + PG+ + L+ N P DDG G +D GG
Sbjct: 311 LNIYPRNAYHHRRPGTPTTNSVLSQLNIYPRLNNDGQDDDGDDANGYGGDVDDGCGDGGD 370
Query: 329 FNPGKRCVNMWDEGCINDQINGAGNDD 409
+N G C D+GC D+ +G G+DD
Sbjct: 371 YNNGG-C----DDGCDGDEGDGGGDDD 392
>SB_24036| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2208
Score = 27.5 bits (58), Expect = 8.6
Identities = 21/97 (21%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
Frame = -1
Query: 406 IVTGSIDLIIDA-AFVPHVDTTLAWIESTAEVIVIVACSG*LSIGTAVIPHIKAPLAGIK 230
+VTG L++ V VDT + T V V G ++ V+ + + +
Sbjct: 344 VVTGVDTLVVGVETLVVGVDTDVVTGVETLVVGVETLVVGVDTLVVGVVTDVVTGVETLV 403
Query: 229 VTIQIIVIPTRSWKLSIDTALIPHVDTAAISISSGVM 119
V + +V+ + + +DT ++ VDT + + + V+
Sbjct: 404 VGVDTLVVGVDTLVVGVDTDVVTGVDTFVVGVETFVV 440
>SB_18156| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 704
Score = 27.5 bits (58), Expect = 8.6
Identities = 7/27 (25%), Positives = 14/27 (51%)
Frame = +2
Query: 86 LVSLVCSKSFGHHPATYGDRRCVNMWD 166
++ +C + FG H +R+C W+
Sbjct: 208 VICYICGRDFGPHSINVHERQCAKRWE 234
>SB_16648| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 147
Score = 27.5 bits (58), Expect = 8.6
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = +2
Query: 221 NGNFNPGKRCLNMWDDGCANGQLPGAGNDDYYLGGGFNPGKRCVNMWDEGCINDQINGAG 400
NGN N G N DD G + DD +GGG + ++ +D+ D + G G
Sbjct: 19 NGNNNGGSYSYNNDDDDFIVGGIGDNNGDDDDVGGGISG----ISNYDDD-DQDNVGGIG 73
Query: 401 ND 406
+D
Sbjct: 74 DD 75
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,818,359
Number of Sequences: 59808
Number of extensions: 431377
Number of successful extensions: 1203
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1154
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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