Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11j24r
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces...    27   2.0  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    27   2.0  
SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.6  
SPCC790.03 |||rhomboid family protease|Schizosaccharomyces pombe...    26   4.6  
SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual           26   6.1  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    25   8.1  

>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 578

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 170 KSKLKCNTYMTLVYFYLRIVLLFHYCF 90
           +SKL  N Y TL  F   I+L+F+ CF
Sbjct: 307 QSKLNKNEYSTLEEFESDILLMFNNCF 333


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +2

Query: 161 TSIYFLFNDNNIQLIKLTFMNCYMCNS-KNLKFFAS 265
           TS +F+ ++N + L++   +N Y+C+    L+FF S
Sbjct: 17  TSCHFISSENCLVLLQALKINIYLCSEVHGLQFFTS 52


>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -3

Query: 526 LPNIPKRGFFCFLKFVFLKNIVLQLQLLSLVYNVNIFLYNI 404
           L  +PK   F F K +  KNI+  + LL +  +V +F+Y+I
Sbjct: 31  LKTLPKTSIFFFDKALSSKNIIEIIGLLCI--HVALFIYSI 69


>SPCC790.03 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 248

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 533 TATAKHSKTRLFLFFKIRILKKYCFTI 453
           +A+  HS  RL  FF +  +  YCF I
Sbjct: 135 SASCVHSPQRLISFFNLFSIPAYCFPI 161


>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 604

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 496 CFLKFVFLKNIVLQLQLLSLVYNVNIFLYNIFSYLP 389
           C L F++ +N+ L   LL  +    +F+YN   YLP
Sbjct: 275 CMLSFIYFENVALYTNLLLAI----VFVYN---YLP 303


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1142

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/45 (24%), Positives = 23/45 (51%)
 Frame = -3

Query: 526  LPNIPKRGFFCFLKFVFLKNIVLQLQLLSLVYNVNIFLYNIFSYL 392
            +P      FF  + F+ L  I+   ++L  + +V  ++ N+F +L
Sbjct: 1035 IPFPTHHNFFSIIPFILLTEILRTGKMLPRLNDVEYYINNVFLFL 1079


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,532,015
Number of Sequences: 5004
Number of extensions: 48460
Number of successful extensions: 116
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)