Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11j24f
         (540 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    29   0.33 
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    28   1.0  
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei...    28   1.0  
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    27   2.3  
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc...    26   4.1  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    26   4.1  
SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    25   5.4  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   5.4  
SPAC17G6.15c |||MTC tricarboxylate transporter|Schizosaccharomyc...    25   7.2  
SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|ch...    25   7.2  
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran...    25   7.2  

>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 29.5 bits (63), Expect = 0.33
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
 Frame = +1

Query: 142 ESTGPFQPWANDENSKDVKSEAELADDAKLHR----EDV---NHPKHRQTASYNKESVSD 300
           + +G F  + ND+ +K+++S      DAK  +    ED    N+  HR   S  K ++  
Sbjct: 82  KESGAFGSYKNDDVAKEIESSKNQETDAKSEQAPFTEDASSSNYAHHRSADSQTKSAL-- 139

Query: 301 STNAPGSSS 327
             N P SSS
Sbjct: 140 PPNVPASSS 148


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -1

Query: 273 RSLPMFWMIDIFPMKFRVIR*FCLTFHVFRVFVICPRLKWTGTFHS 136
           RS+  FW++    + F  I  F +  H+F   V  P+L +  ++ S
Sbjct: 696 RSVKTFWIMSSISLTFLCISCFIMRHHLFVWSVFSPKLLYNASWAS 741


>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
           Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +1

Query: 172 NDENSKDVKSEAELADDAKLHREDVNHPKHRQTASYNKESVSDS 303
           NDEN K+     E ++ A  +  D   PK  +  S  K  V+ S
Sbjct: 301 NDENEKNENEPIEASESAPTNVSDSTEPKASEVDSEEKSGVTAS 344


>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +1

Query: 211 LADDAKLHREDVNHPKHRQTASYNKESVSDSTNAPGSSS 327
           +AD+ +LH    N   HR  + Y ++++  S+ A G  +
Sbjct: 352 IADEYELHLPSGNRVGHRSLSRYFRQNLHSSSTAVGDGA 390


>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
           binuclear cluster type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 522

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/57 (22%), Positives = 26/57 (45%)
 Frame = +1

Query: 157 FQPWANDENSKDVKSEAELADDAKLHREDVNHPKHRQTASYNKESVSDSTNAPGSSS 327
           +QP + D  +     E+ L+  A      +NH    Q  + ++ S S S ++ G ++
Sbjct: 310 YQPSSRDLQNHPTVDESRLSSVAPPASNTLNHANGNQAENASESSTSQSNDSQGPAN 366


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
           Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -1

Query: 495 QQLFCSAEGFNSFY*VSYSLSALLTESVLNYLLHRSYFVRV 373
           + +  + E   +F    YSL + + ESVL+YL + +  +R+
Sbjct: 457 ESIILALETLGTFNFTGYSLISFIQESVLSYLENDNSEIRI 497


>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -1

Query: 477 AEGFNSFY*VSYSLSALLTESVLNYLLHRSYFVRVHLGF-CTLGSTTG 337
           A GF   + +      +L+ SVL+   H +YFV  H  +  ++G+  G
Sbjct: 348 AIGFLILFTIGGLTGVILSNSVLDIAFHDTYFVVAHFHYVLSMGALFG 395


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +1

Query: 172 NDENSKDVKSEAELADDAKLHREDVNHPKHRQTASYNKESVSDSTNAP 315
           ND+ S D +S +      ++ R    H  H Q AS N+ S    TN P
Sbjct: 370 NDQISSDPESNSSDLQYLRMFRFPSFHQSHNQPASNNEAS---DTNGP 414


>SPAC17G6.15c |||MTC tricarboxylate transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 320 PRVTLAPVVLPRVQNPRWTRTK 385
           P + + P+VL R+Q   W RT+
Sbjct: 242 PIMVIPPLVLMRLQKQNWLRTR 263


>SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 192 VFRVFVICPRLKWTGTFHSSP 130
           VFR FV+ P+LK T  F   P
Sbjct: 238 VFRKFVVMPKLKKTNRFIEIP 258


>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 516

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +1

Query: 154 PFQPWANDENSKDVKSEAELADDAKLHR 237
           PF+ W  DE  K+ +   E  ++  L R
Sbjct: 432 PFEEWKKDEREKEKRKRQEEEEENNLDR 459


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,083,130
Number of Sequences: 5004
Number of extensions: 39988
Number of successful extensions: 102
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)