Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11j24f
         (540 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0534 + 30057933-30058290,30058472-30059454                       29   3.1  
03_01_0469 - 3613062-3613745,3613952-3614512,3614600-3614690,361...    28   5.5  
07_01_1037 - 9026198-9026586,9026773-9026937,9027010-9027096,902...    27   7.2  
08_01_0406 + 3607088-3607231,3608900-3608996,3609121-3609185,361...    27   9.6  

>01_06_0534 + 30057933-30058290,30058472-30059454
          Length = 446

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -3

Query: 283 YCKTQFAYVLDD*HLPDEVSRHPLILPHFSRLSSFRHLPKAEMDRYFPF 137
           Y    F Y +      DEV  H L LP F+ L  F    +A+++R   F
Sbjct: 79  YFVDNFRYRIFQAQAKDEVGDHSLDLPPFNPLERFFIFTRAKLERVIKF 127


>03_01_0469 -
           3613062-3613745,3613952-3614512,3614600-3614690,
           3614782-3614870,3614962-3615027,3615309-3615423,
           3615521-3615966
          Length = 683

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +1

Query: 115 FFIAHWARMESTGPFQPWANDENSKDVKSE 204
           ++  HW   ES  PF  W +    KDV  E
Sbjct: 222 YYYQHWLHCESKQPFFYWLDVGEGKDVSME 251


>07_01_1037 -
           9026198-9026586,9026773-9026937,9027010-9027096,
           9027173-9027245,9027947-9028012,9028096-9028194,
           9028710-9028772,9028959-9029345
          Length = 442

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +1

Query: 220 DAKLHREDVNHPKHRQTASYNKESVSDSTNAPGSSSD 330
           D ++  +D+N P ++ T SY+ +     T++  +SSD
Sbjct: 282 DTRMKEKDIN-PSNKNTPSYSADQQFQKTSSSSASSD 317


>08_01_0406 +
           3607088-3607231,3608900-3608996,3609121-3609185,
           3610268-3610372,3610492-3610554,3610801-3610834,
           3610921-3611043,3611269-3611362,3611452-3611497,
           3611692-3611759,3611843-3611891,3612032-3612097,
           3612443-3612475
          Length = 328

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = -1

Query: 435 SALLTESVLNYLLHRSYFVRVHLGFCTLGSTTGASVTRG 319
           SA+ T+S++ ++     F  +H+GFC + + T   + +G
Sbjct: 239 SAMRTDSMVTFVQF-FVFYSIHVGFCVIAAVTPPIIFKG 276


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,314,012
Number of Sequences: 37544
Number of extensions: 240966
Number of successful extensions: 588
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)