Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11j24f
         (540 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2375| Best HMM Match : Pentapeptide_2 (HMM E-Value=2.7)             32   0.26 
SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.80 
SB_35651| Best HMM Match : NUMOD3 (HMM E-Value=3.2)                    30   1.4  
SB_10578| Best HMM Match : NUMOD3 (HMM E-Value=3.2)                    30   1.4  
SB_17425| Best HMM Match : Homeobox (HMM E-Value=7.2e-07)              29   3.2  
SB_22851| Best HMM Match : Sad1_UNC (HMM E-Value=0)                    28   4.2  
SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)            27   7.4  
SB_5948| Best HMM Match : OmpA (HMM E-Value=2)                         27   7.4  
SB_58969| Best HMM Match : Avidin (HMM E-Value=3.7)                    27   9.8  
SB_18299| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  

>SB_2375| Best HMM Match : Pentapeptide_2 (HMM E-Value=2.7)
          Length = 521

 Score = 32.3 bits (70), Expect = 0.26
 Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
 Frame = +2

Query: 215 RMTRNFIGKMSIIQN-IGKLRLTIKKVSVIQLTLQDPRVTLAPVVLPRVQNPRWTRTK 385
           R+TR  I K  I    I + R+T K++++ ++T    R+T   ++  R+  PR TRT+
Sbjct: 438 RITRTRIAKTRITPTRITRPRITRKRITLTRIT--QTRITRTRIIPTRITKPRITRTR 493


>SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2839

 Score = 30.7 bits (66), Expect = 0.80
 Identities = 16/51 (31%), Positives = 30/51 (58%)
 Frame = +1

Query: 178  ENSKDVKSEAELADDAKLHREDVNHPKHRQTASYNKESVSDSTNAPGSSSD 330
            E  ++++   E    ++ H+E ++ P+  +TAS + +SV DS    GSSS+
Sbjct: 2568 EEREEMERAKEELKRSRQHQE-ISAPEPERTASESSDSVKDSPRTRGSSSE 2617


>SB_35651| Best HMM Match : NUMOD3 (HMM E-Value=3.2)
          Length = 228

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +1

Query: 163 PWANDENSKDVKSEAELAD-DAKLHREDVNHPKHRQTASYNKESVSDSTNAPGSSSD 330
           P  + + SK+ K   +  D D+K H++  +H  H+    +     SD T    S S+
Sbjct: 120 PSKDQKGSKETKEHKDSKDKDSKEHKDQKSHNHHKDPRGHKDRHHSDKTKDKPSQSE 176


>SB_10578| Best HMM Match : NUMOD3 (HMM E-Value=3.2)
          Length = 379

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +1

Query: 163 PWANDENSKDVKSEAELAD-DAKLHREDVNHPKHRQTASYNKESVSDSTNAPGSSSD 330
           P  + + SK+ K   +  D D+K H++  +H  H+    +     SD T    S S+
Sbjct: 61  PSKDQKGSKETKEHKDSKDKDSKEHKDQKSHNHHKDPRGHKDRHHSDKTKDKPSQSE 117


>SB_17425| Best HMM Match : Homeobox (HMM E-Value=7.2e-07)
          Length = 387

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 160 QPWANDENSKDVKSEAELADDAKLHREDVN 249
           +P     NSK +K E  +    K+HR+ VN
Sbjct: 334 KPHKTSNNSKTLKQETAIITSTKMHRDSVN 363


>SB_22851| Best HMM Match : Sad1_UNC (HMM E-Value=0)
          Length = 1705

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +1

Query: 172 NDENSKDVKSEAELADDAKLHREDVNHPKHRQTASYNKES 291
           N    K+  S+ E + + K H E+V HP H++      E+
Sbjct: 406 NTSEDKEPISKPEESIERKEHHEEVTHPAHKEGVKLEVET 445


>SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)
          Length = 1439

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +1

Query: 217  DDAKLHREDVNHPKHRQTASYNKES 291
            DD +  RED+ +P HR+T+S ++ +
Sbjct: 1235 DDLQRSREDLYYPDHRRTSSEDRSA 1259


>SB_5948| Best HMM Match : OmpA (HMM E-Value=2)
          Length = 262

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 342 WCYRGYRTRDGLEQNNFYATNS*EHSQSRGPTKSNSL 452
           W   GYR   G+  ++FY  N+ ++ +S   +  N L
Sbjct: 151 WSANGYRASGGIADDSFYEDNNIDNEESYDFSPENRL 187


>SB_58969| Best HMM Match : Avidin (HMM E-Value=3.7)
          Length = 706

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = +1

Query: 190 DVKSEAELADDAKLHREDVNHPKHRQTASYNKESVSDSTNA 312
           D +SEA  A  AK  R    H K  QTA    + V+DS  A
Sbjct: 15  DARSEACAARIAKTARIYTQHVKDSQTARIYTQHVNDSQTA 55


>SB_18299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 698

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 11/46 (23%), Positives = 23/46 (50%)
 Frame = +1

Query: 382 KITSMQQIVENTLSQEGRQRVTHLIEAVEALSGAEKLLLYLRLPTG 519
           K+   + ++EN +S   R +  H++E +E      ++ L + L  G
Sbjct: 55  KVKGKEHMIENEISILRRVKHNHIVELIEEYETPREIFLVMELVKG 100


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,512,314
Number of Sequences: 59808
Number of extensions: 283283
Number of successful extensions: 797
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)