Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11j24f
(540 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 29 1.6
AF047663-6|AAC04447.1| 368|Caenorhabditis elegans Hypothetical ... 29 1.6
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated... 29 1.6
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 29 1.6
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 29 1.6
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 29 1.6
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 29 1.6
Z81037-4|CAB02747.2| 391|Caenorhabditis elegans Hypothetical pr... 28 3.7
Z81100-1|CAB03194.1| 331|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z74037-5|CAA98493.3| 509|Caenorhabditis elegans Hypothetical pr... 27 8.6
AB044562-1|BAA96734.1| 509|Caenorhabditis elegans MIG-17 protein. 27 8.6
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 29.5 bits (63), Expect = 1.6
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 238 EDVNHPKHRQTASYNKESVSDSTNAPGSSS 327
EDVN+ H +SY ES++ T+ G S+
Sbjct: 23 EDVNYSTHSSRSSYRSESLTSRTDGRGRST 52
>AF047663-6|AAC04447.1| 368|Caenorhabditis elegans Hypothetical
protein W09G12.7 protein.
Length = 368
Score = 29.5 bits (63), Expect = 1.6
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +1
Query: 178 ENSKDVKSEAELADDAKLHREDVNHPKHRQTASYNKESVSDSTNAPGSSSD 330
++S D S++ + D+ +D K + S NK S SDS+++ SSD
Sbjct: 135 KDSSDDSSDSSDSSDSSDSSDDDKKKKKKSKKSKNKGSSSDSSDSSDDSSD 185
>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
protein 89, isoform e protein.
Length = 5992
Score = 29.5 bits (63), Expect = 1.6
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 238 EDVNHPKHRQTASYNKESVSDSTNAPGSSS 327
EDVN+ H +SY ES++ T+ G S+
Sbjct: 23 EDVNYSTHSSRSSYRSESLTSRTDGRGRST 52
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 29.5 bits (63), Expect = 1.6
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 238 EDVNHPKHRQTASYNKESVSDSTNAPGSSS 327
EDVN+ H +SY ES++ T+ G S+
Sbjct: 23 EDVNYSTHSSRSSYRSESLTSRTDGRGRST 52
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 29.5 bits (63), Expect = 1.6
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 238 EDVNHPKHRQTASYNKESVSDSTNAPGSSS 327
EDVN+ H +SY ES++ T+ G S+
Sbjct: 23 EDVNYSTHSSRSSYRSESLTSRTDGRGRST 52
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 29.5 bits (63), Expect = 1.6
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 238 EDVNHPKHRQTASYNKESVSDSTNAPGSSS 327
EDVN+ H +SY ES++ T+ G S+
Sbjct: 23 EDVNYSTHSSRSSYRSESLTSRTDGRGRST 52
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 29.5 bits (63), Expect = 1.6
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 238 EDVNHPKHRQTASYNKESVSDSTNAPGSSS 327
EDVN+ H +SY ES++ T+ G S+
Sbjct: 23 EDVNYSTHSSRSSYRSESLTSRTDGRGRST 52
>Z81037-4|CAB02747.2| 391|Caenorhabditis elegans Hypothetical
protein C17E4.6 protein.
Length = 391
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/48 (25%), Positives = 23/48 (47%)
Frame = +1
Query: 169 ANDENSKDVKSEAELADDAKLHREDVNHPKHRQTASYNKESVSDSTNA 312
+NDE+S + + + + D H E+ N+ES +++NA
Sbjct: 22 SNDEHSNESSTRSSKSRDGSHHNEEEGETSKASDPQINEESEDETSNA 69
>Z81100-1|CAB03194.1| 331|Caenorhabditis elegans Hypothetical
protein K08G2.7 protein.
Length = 331
Score = 27.9 bits (59), Expect = 4.9
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = -3
Query: 217 PLILPHFSRLSSFRHLPKAEMDRYFPF*PNEL*KIVFIDLILPFFYGVLKMRNKT 53
PL+L +F+ +S+ +HL ++D YF F + I+ L +P + K+ + T
Sbjct: 165 PLLLVYFAHISNLKHL-NYQIDMYF-FFGEHIFLILSNSLYVPIIISIRKLTHLT 217
>Z74037-5|CAA98493.3| 509|Caenorhabditis elegans Hypothetical
protein F57B7.4 protein.
Length = 509
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/55 (20%), Positives = 28/55 (50%)
Frame = +1
Query: 370 MDSNKITSMQQIVENTLSQEGRQRVTHLIEAVEALSGAEKLLLYLRLPTGVPPHD 534
+ S+ +++ V+ TL + T + +++ +K ++L+ TG+P H+
Sbjct: 196 ISSDMPKKLRKFVDITLEEMQENNSTEMTLKIDSKKAIDKFTIWLKEQTGLPRHE 250
>AB044562-1|BAA96734.1| 509|Caenorhabditis elegans MIG-17 protein.
Length = 509
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/55 (20%), Positives = 28/55 (50%)
Frame = +1
Query: 370 MDSNKITSMQQIVENTLSQEGRQRVTHLIEAVEALSGAEKLLLYLRLPTGVPPHD 534
+ S+ +++ V+ TL + T + +++ +K ++L+ TG+P H+
Sbjct: 196 ISSDMPKKLRKFVDITLEEMQENNSTEMTLKIDSKKAIDKFTIWLKEQTGLPRHE 250
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,611,484
Number of Sequences: 27780
Number of extensions: 222651
Number of successful extensions: 522
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -