Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11j24f
         (540 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi...    29   2.6  
At1g67970.1 68414.m07764 heat shock factor protein, putative (HS...    28   4.6  
At2g38110.1 68415.m04678 phospholipid/glycerol acyltransferase f...    27   6.1  

>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
           PF00076 RNA recognition motif
          Length = 636

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 9/75 (12%)
 Frame = +1

Query: 133 ARMESTGPFQPWANDENSKDVKSEAELADDAKLHR---------EDVNHPKHRQTASYNK 285
           A++ES+      ++DE +  VK +  + + AK+           ++   P  +QTA   K
Sbjct: 146 AKVESSSSDDDSSSDEETVPVKKQPAVLEKAKIESSSSDDDSSSDEETVPMKKQTAVLEK 205

Query: 286 ESVSDSTNAPGSSSD 330
                S++  GSSSD
Sbjct: 206 AKAESSSSDDGSSSD 220


>At1g67970.1 68414.m07764 heat shock factor protein, putative (HSF5)
           / heat shock transcription factor, putative (HSTF5)
           identical to heat shock transcription factor 5 (HSF5)
           SP:Q9S7U5 from [Arabidopsis thaliana]; contains Pfam
           profile: PF00447 HSF-type DNA-binding domain
          Length = 374

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 98  EINKNYFL*LIGLEWKVPVHFSLGQMTKTR 187
           E++K+Y L LI  E + P  F  GQ+T  R
Sbjct: 327 ELDKSYMLKLISEEMEKPDDFEFGQLTPER 356


>At2g38110.1 68415.m04678 phospholipid/glycerol acyltransferase
           family protein low similarity to SP|O87707 CicA protein
           {Caulobacter crescentus}; contains Pfam profile PF01553:
           Acyltransferase
          Length = 501

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
 Frame = -1

Query: 444 YSLSALLTESVLNYLLHRSYFVRVHLGFCTLGSTTGASV-TRGSWSVS*ITDTFFIVRRS 268
           Y L AL   S+L  L+       V+L + T+  T   +V    +++   I D   +VR  
Sbjct: 44  YFLVALEAGSLLRALILLVSVPFVYLTYLTISETLAINVFVFITFAGLKIRDVELVVRSV 103

Query: 267 LPMFWMIDIFPMKFRVIR*F 208
           LP F+  D+ P  +R+   F
Sbjct: 104 LPRFYAEDVRPDTWRIFNTF 123


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,836,858
Number of Sequences: 28952
Number of extensions: 203496
Number of successful extensions: 488
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)