Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11j23r
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    27   2.9  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    26   5.0  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    26   6.6  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    26   6.6  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    25   8.8  
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces...    25   8.8  

>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -1

Query: 461 FQGIHQ-LN*TMGPHYNQKGVVRPEKSVYVYKKKHSRT 351
           F+G H  L   +G  + ++GV+R +    VY+K H+ T
Sbjct: 240 FKGNHYPLASILGNDFFKRGVIRSQTDYIVYEKMHNHT 277



 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 340 GFTNVRLCFFLYTYTDFSGLTTP 408
           G  N  LC++  T  DF GL TP
Sbjct: 704 GSCNTSLCYYESTDPDFGGLKTP 726


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 407  LFGCNVVPLFSSIGVFLEMGFQFNNIFL 490
            + GC    L + +G   E GF FNN+ +
Sbjct: 951  IIGCTWTSLSTRLGTLKEKGFCFNNLIV 978


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +3

Query: 465 VFNSIIYFYPTNIITRKFLRMYGCLFVTLSSKATEWILMQLYNNIA 602
           ++  + ++Y  NI  +K    Y CLF+  S    +W L  ++  +A
Sbjct: 458 IYFYVAFYYLQNIPIQKKYESYRCLFI--SGTICQWSLKDMFVLVA 501


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1388

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 509  AKVFKNVWMFVCY 547
            A V KN+WMF CY
Sbjct: 1356 ATVRKNLWMFACY 1368


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -1

Query: 689  SYLPDTYRYILGNLQYIL 636
            +Y  + Y+Y++GN+ YIL
Sbjct: 1214 TYFINVYKYVIGNIIYIL 1231


>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 995

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 710  GLETRFFSYLPDTYRYILGNLQYIL*TIAY 621
            G++   FSYL DT   +L NL+    T A+
Sbjct: 954  GVQVESFSYLEDTKELVLTNLEAFTSTGAF 983


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,142,158
Number of Sequences: 5004
Number of extensions: 68288
Number of successful extensions: 158
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)