Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11j23r
         (752 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37539| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_22942| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_57513| Best HMM Match : rve (HMM E-Value=0.0064)                    29   4.1  
SB_51816| Best HMM Match : 7tm_1 (HMM E-Value=6.4e-24)                 29   4.1  
SB_2073| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.1  
SB_57167| Best HMM Match : Ribosomal_MRP8 (HMM E-Value=3)              28   9.4  

>SB_37539| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 942

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 462 WVFNSIIYFYPTNI-ITRKFLRMYGCLFVTLSSKA 563
           + F  I YF P  + + R ++R YGC+F  L+ +A
Sbjct: 717 FTFVGIDYFGPIQVKVKRSYVRRYGCVFSCLTMRA 751


>SB_22942| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1092

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +1

Query: 253 LKKKTKCIILHESLRWIINSYVTTSKIGEG 342
           L  KTKC++ HE+LR  I+  +  +KI +G
Sbjct: 759 LGDKTKCVVHHETLRLYISLGLKVTKIHKG 788


>SB_57513| Best HMM Match : rve (HMM E-Value=0.0064)
          Length = 515

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = +3

Query: 423 WSHCSVQLV-YSLKWVFNSIIYFYPTNIIT---RKFLRMYGCLFVTLSSKA 563
           W +C  +L+ Y   + F  + +F P  +     R   + YGC+FV ++S+A
Sbjct: 225 WLNCQSRLLPYEPPFTFTGVDFFGPFYVKRGRGRVSTKRYGCIFVCMNSRA 275


>SB_51816| Best HMM Match : 7tm_1 (HMM E-Value=6.4e-24)
          Length = 384

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 3/32 (9%)
 Frame = +3

Query: 405 TFLVVMWSHCSVQ-LVYSLKWVFNS--IIYFY 491
           TF +VMWSHC V+ ++Y+ +  + S  I+ FY
Sbjct: 278 TFKIVMWSHCFVKPIIYAARQRYFSRRILNFY 309


>SB_2073| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 394

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +3

Query: 351 CSAVFFFIYVHRFLRPYYTFLVVMWSHCSVQLVYSLKWVFNSIIYF 488
           C +  FF++V  F   + T + + +  C VQ +  + W  +   YF
Sbjct: 51  CCSANFFLFVTIFSWIFVTIIFLFYFFCLVQKIPQINWDMSVFGYF 96


>SB_57167| Best HMM Match : Ribosomal_MRP8 (HMM E-Value=3)
          Length = 698

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/55 (23%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = +3

Query: 432 CSVQLVYSLKWVFNSIIYFYPTNIITRKFL--RMYGCLFVTLSSKATEWILMQLY 590
           C+ + + + +W+FN++  +    ++TR++L   +Y C    L ++   W+   LY
Sbjct: 471 CTERSLVTRRWLFNTLYTYTERGLVTRRWLFNTLYTCTERGLVTR--RWLFNTLY 523



 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/55 (23%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = +3

Query: 432 CSVQLVYSLKWVFNSIIYFYPTNIITRKFL--RMYGCLFVTLSSKATEWILMQLY 590
           C+ + + + +W+FN++       ++TR++L   +Y C  + L ++   W+   LY
Sbjct: 597 CTERCLVTRRWLFNTLYTCTEMGLVTRRWLFNTLYTCTEMGLVTR--RWLFNTLY 649


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,694,615
Number of Sequences: 59808
Number of extensions: 442362
Number of successful extensions: 783
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)