Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11j23r
         (752 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087081-15|AAK66031.1|  267|Caenorhabditis elegans Hypothetical...    31   0.66 
AF098997-3|AAC68713.1|  348|Caenorhabditis elegans Serpentine re...    28   6.2  
AC084197-40|AAV34779.1|  377|Caenorhabditis elegans Hypothetical...    28   8.2  
AC084197-39|AAL00874.3|  392|Caenorhabditis elegans Hypothetical...    28   8.2  

>AC087081-15|AAK66031.1|  267|Caenorhabditis elegans Hypothetical
           protein Y82E9BL.4 protein.
          Length = 267

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 666 LYFG*FTIYLINDSLCVILMCQLYYCKVAS 577
           +YF   ++ +  D++C+ L   +YYCK AS
Sbjct: 65  IYFPKISLQIYTDNICIALEDYIYYCKAAS 94


>AF098997-3|AAC68713.1|  348|Caenorhabditis elegans Serpentine
           receptor, class h protein71 protein.
          Length = 348

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = +1

Query: 235 YSSFCMLKKKTKCIILHESLRWIINSYVTTSKIGEGFTNVRLCFFLYTYTDFSGLTT 405
           ++ +C+LKK  +C+   +   WI+N +   S++   F      +F Y      GL T
Sbjct: 48  FTGYCILKKSPECMKQVKFGLWILNVWYAISQLIYSFIITPYNYFPYLAGFSVGLAT 104


>AC084197-40|AAV34779.1|  377|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.31b protein.
          Length = 377

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 21/76 (27%), Positives = 30/76 (39%)
 Frame = -2

Query: 682 YLTLIVIFWVIYNISYKR*PMCYSDVSAILL*SCIKIHSVALLERVTNKHPYILKNFRVI 503
           Y+T  V+FWV  N  Y R  +  S   A  + +C       L   V      I K   V+
Sbjct: 144 YVTPFVVFWVGANYPYVRALLLISPSVATSISACNAAFVYILAIIVLGDTINIFKILSVV 203

Query: 502 ILVG*KYIIELKTHFK 455
           + +G   +I L    K
Sbjct: 204 LAIGGVVVISLDNEMK 219


>AC084197-39|AAL00874.3|  392|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.31a protein.
          Length = 392

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 21/76 (27%), Positives = 30/76 (39%)
 Frame = -2

Query: 682 YLTLIVIFWVIYNISYKR*PMCYSDVSAILL*SCIKIHSVALLERVTNKHPYILKNFRVI 503
           Y+T  V+FWV  N  Y R  +  S   A  + +C       L   V      I K   V+
Sbjct: 159 YVTPFVVFWVGANYPYVRALLLISPSVATSISACNAAFVYILAIIVLGDTINIFKILSVV 218

Query: 502 ILVG*KYIIELKTHFK 455
           + +G   +I L    K
Sbjct: 219 LAIGGVVVISLDNEMK 234


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,828,063
Number of Sequences: 27780
Number of extensions: 362348
Number of successful extensions: 779
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)