Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11j23r
         (752 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   4.1  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   5.4  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   5.4  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   5.4  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    22   7.1  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   9.4  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 438 VQLVYSLKWVFNSIIY 485
           V++V  +KW + SIIY
Sbjct: 272 VEIVMKMKWSYVSIIY 287



 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +2

Query: 356 GCVFFYIRTQISQALLHLFGCNVVPLFSSIG 448
           GC+ F    +++  +  +  CN    FS IG
Sbjct: 344 GCIIFGSDQEVAGVMRAVKRCNATGAFSWIG 374


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 12  YNKTYNSNIAYLYK 53
           YN  YN+N   LYK
Sbjct: 105 YNNNYNNNYKKLYK 118


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 12  YNKTYNSNIAYLYK 53
           YN  YN+N   LYK
Sbjct: 105 YNNNYNNNYKKLYK 118


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 650 NYPKYNDKCQVSRKKIWFPIQY 715
           NY  YN+    + KK+++ I Y
Sbjct: 336 NYNNYNNNYNNNYKKLYYNINY 357


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 650 NYPKYNDKCQVSRKKIWFPIQY 715
           NY  YN+      KK+++ I Y
Sbjct: 93  NYNNYNNNYNNYNKKLYYNINY 114


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 34  TLRIYINAVLFLRSSVLNYT 93
           TLR+Y  A + +R ++ +YT
Sbjct: 363 TLRMYPPASILMRKAISDYT 382


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,613
Number of Sequences: 438
Number of extensions: 5025
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)