Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11j23r
         (752 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g05490.2 68418.m00593 cohesion family protein SYN1, splice va...    31   0.82 
At5g05490.1 68418.m00592 cohesion family protein SYN1, splice va...    31   0.82 
At4g16400.1 68417.m02482 expressed protein                             28   5.8  
At5g65440.1 68418.m08230 expressed protein                             28   7.7  

>At5g05490.2 68418.m00593 cohesion family protein SYN1, splice
           variant 1 (SYN1) identical to SYN1 splice variant 1
           [Arabidopsis thaliana] GI:6453715
          Length = 617

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = +2

Query: 236 TLHFVC*RKKLNVLYYTRVCGGLLIVMLPLQK*AKGLLMFGCVFFYIR 379
           TLH    RKKL+ L   ++C  +L   +P+     G+LM G V  Y R
Sbjct: 22  TLHAKINRKKLDKLDIIQICEEILNPSVPMALRLSGILMGGVVIVYER 69


>At5g05490.1 68418.m00592 cohesion family protein SYN1, splice
           variant 1 (SYN1) identical to SYN1 splice variant 1
           [Arabidopsis thaliana] GI:6453715
          Length = 627

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = +2

Query: 236 TLHFVC*RKKLNVLYYTRVCGGLLIVMLPLQK*AKGLLMFGCVFFYIR 379
           TLH    RKKL+ L   ++C  +L   +P+     G+LM G V  Y R
Sbjct: 32  TLHAKINRKKLDKLDIIQICEEILNPSVPMALRLSGILMGGVVIVYER 79


>At4g16400.1 68417.m02482 expressed protein
          Length = 209

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = +3

Query: 399 YYTFLVVMWSHCSVQLVYSLKWVFNSIIYFYPTNIITRKFLRM---YGCLFVTLSSKATE 569
           ++  + +M S     LVY+   + N + YF+P    T  FL M   +G  F  LS +AT 
Sbjct: 133 FHFMVTIMVSVIVASLVYAAPRILNILAYFWPLFASTAAFLAMAITFGG-FQQLSEEATG 191

Query: 570 WILM 581
             LM
Sbjct: 192 ERLM 195


>At5g65440.1 68418.m08230 expressed protein
          Length = 1050

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +1

Query: 193 PNHELIRMYKLLMCYSSFCMLKKKTKCIILHES 291
           P HELI   +L   YSS   L +KTKC ++ E+
Sbjct: 400 PEHELIGRIQLTFSYSS--SLDEKTKCGLVAET 430


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,245,624
Number of Sequences: 28952
Number of extensions: 309806
Number of successful extensions: 589
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)