Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11j23f
         (584 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    66   3e-12
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    30   0.29 
SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces pom...    29   0.66 
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    26   3.5  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    26   4.7  
SPBC11B10.02c |his3||histidinol-phosphate aminotransferase imida...    26   4.7  
SPBC582.07c |rpn7||19S proteasome regulatory subunit Rpn7|Schizo...    25   6.2  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    25   8.1  
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    25   8.1  

>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 66.5 bits (155), Expect = 3e-12
 Identities = 33/90 (36%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
 Frame = +2

Query: 149 LRGYLSKWTNYIHGWQDRFIVLKDSTLSYYKNELESNLGCRGALCLKKAKVKPHEFDDCR 328
           + GYL KWTNY  G++ R+  L +  LSYYKN+ +++  CRG++ LK A++         
Sbjct: 257 MSGYLKKWTNYKSGYKLRWFTLNNGVLSYYKNQDDASSACRGSINLKLARLVHDPKQPTV 316

Query: 329 FDVSVSDCVWY-LRASNPEEKQQWIDILES 415
           F V     V Y ++A++P E ++WI  + S
Sbjct: 317 FQVIGKGSVRYSVKANSPVEAKKWIAAISS 346


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 140 TPELRGYLSKWTNYIHGWQDRFIVLKDSTLSYY 238
           T +  G++ K ++    W+ R+ VLK + LSYY
Sbjct: 698 TADCHGWMRKRSDRYGVWKSRYFVLKGTRLSYY 730


>SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 336

 Score = 28.7 bits (61), Expect = 0.66
 Identities = 17/33 (51%), Positives = 17/33 (51%)
 Frame = -3

Query: 492 AEPCL*RPPPFELLSELVPYPDSTLKDSRISIH 394
           A  CL    P EL SELV  P S LKD    IH
Sbjct: 29  ARKCLDDMKPIELPSELVESPLSMLKDVATLIH 61


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = +2

Query: 275  ALCLKKAKVKPHEFDDCRFDVSVSDCV-WYLRASNPEEKQQWI 400
            ALC+      PH+FD   F V   + + W  R ++      WI
Sbjct: 1543 ALCVAPFLFNPHQFDWNDFFVDYREFIRWLSRGNSRSHANSWI 1585


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 500 LQSTGSHGHSTRRLTEKITELETYNEL 580
           L+      H   +LTE+I +LET N+L
Sbjct: 411 LEENALLSHKVLKLTEEIQDLETLNQL 437


>SPBC11B10.02c |his3||histidinol-phosphate aminotransferase
           imidazole acetol phosphate transaminase
           His3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -2

Query: 580 KLIVRFQLSDFLCEATCRVTV 518
           K++VRF+ ++ LCE   R+TV
Sbjct: 340 KVVVRFRGTEPLCEGALRITV 360


>SPBC582.07c |rpn7||19S proteasome regulatory subunit
           Rpn7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 409

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -3

Query: 117 LSLTVMFSSIILCYVYGSVN-IKSTLNKMTPNNEK 16
           + + V+FS I L YVY  +  +   L K+ P  EK
Sbjct: 147 MKIDVLFSKIRLAYVYADMRVVGQLLEKLKPLIEK 181


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/46 (23%), Positives = 19/46 (41%)
 Frame = -3

Query: 159 YPRSSGVPPSSKSELSLTVMFSSIILCYVYGSVNIKSTLNKMTPNN 22
           Y    G+PPS  S  +  +   S+  C +    N+   +  + P N
Sbjct: 641 YEMLCGIPPSDTSHQADMITMQSLYYCPIELIENLLRAITSLLPKN 686


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -3

Query: 513 PVDCSEVAEPCL*RPPPFELLSELVPYPDSTLKDSRISI 397
           PVD    + P + RPP  + LS  V   D ++  S   +
Sbjct: 317 PVDTHTPSTPIMSRPPSMKALSSGVESQDESVASSNFQV 355


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,171,417
Number of Sequences: 5004
Number of extensions: 39172
Number of successful extensions: 132
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)