Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11j23f
(584 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0359 + 3152483-3152857,3154493-3154855,3155133-3155211,315... 41 6e-04
03_05_0843 + 28126480-28127007,28127092-28127457,28129388-281294... 41 6e-04
01_06_1395 + 37010446-37010895 40 0.001
12_01_1055 - 10861665-10861829,10862827-10863171,10864374-108646... 39 0.003
05_05_0038 - 21769936-21770199,21770785-21771198,21771274-217714... 37 0.010
07_01_0700 + 5280650-5281757,5282509-5282519,5282872-5282967 32 0.29
10_08_0877 + 21230447-21230815,21231855-21232208,21232417-212325... 32 0.39
06_01_0989 + 7672764-7672904,7673017-7673067,7673176-7673296,767... 29 3.6
05_01_0066 - 465526-466107,466541-466741 29 3.6
02_05_1156 - 34528204-34529411,34529982-34530122,34530214-34531072 28 4.8
06_03_0576 - 22443668-22444146,22446239-22446393,22447251-224473... 28 6.3
11_06_0696 + 26358713-26359779,26359826-26360110,26360177-263603... 27 8.3
>08_01_0359 +
3152483-3152857,3154493-3154855,3155133-3155211,
3155473-3155879,3156342-3156497,3156728-3156895,
3156991-3157131,3157739-3157966,3158063-3158176,
3158293-3158448
Length = 728
Score = 41.1 bits (92), Expect = 6e-04
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = +2
Query: 134 GGTPELRGYLSKWTNYIHGWQDRFIVLKDSTLSYYK 241
G + G L KWTNY GW++R+ L D LSY K
Sbjct: 43 GAAVAVAGVLHKWTNYGRGWRERWFSLHDGVLSYSK 78
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +2
Query: 272 GALCLKKAKVKPHEFDDCRFDVSVSDCVWYLRASNPEEKQQWIDIL 409
G +CLK + + + DD RF + +L+ + E++ WI+ L
Sbjct: 120 GVVCLKLSAFRESKSDDRRFYIFSPTKTLHLKTDSKEDRVAWIEAL 165
>03_05_0843 +
28126480-28127007,28127092-28127457,28129388-28129487,
28130266-28130546,28130643-28130705,28131276-28131431,
28131913-28132080,28132158-28132298,28132714-28132840,
28132888-28132994,28134142-28134372,28134446-28134559,
28135091-28135261
Length = 850
Score = 41.1 bits (92), Expect = 6e-04
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +2
Query: 149 LRGYLSKWTNYIHGWQDRFIVLKDSTLSYYK 241
+ G L KW NY GW+ R+ L D LSYYK
Sbjct: 89 ISGILYKWVNYGRGWRPRWFALHDGVLSYYK 119
Score = 31.9 bits (69), Expect = 0.39
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +2
Query: 272 GALCLKKAKVKPHEFDDCRFDVSVSDCVWYLRASNPEEKQQWIDILESFK 421
G + LK + V+ DD RF + +LRA E++ W++ L++ K
Sbjct: 171 GEIHLKVSSVRESRSDDRRFSIFSGTKRLHLRAETREDRAAWVEALQATK 220
>01_06_1395 + 37010446-37010895
Length = 149
Score = 40.3 bits (90), Expect = 0.001
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Frame = +2
Query: 140 TPELRGYLSKWTNYIHGWQDRFIVLKDSTLSYYKNELESNLGC-RG----ALCLKKAKVK 304
+PE G+L+K YI W+ R+ VLK L ++K+ + RG A CL +
Sbjct: 21 SPERAGWLTKQGEYIKTWRRRWFVLKQGRLFWFKDSGVTRASVPRGVIPVATCLTVKGAE 80
Query: 305 PHEFDDCRFDVSVSDCVWYLRASNPEEKQQWID 403
F++S Y A + +EK++WI+
Sbjct: 81 DTLNRQFAFELSTPAETMYFIADSEKEKEEWIN 113
>12_01_1055 -
10861665-10861829,10862827-10863171,10864374-10864682,
10864813-10864968,10865669-10866117,10869275-10869359,
10869944-10870300,10870672-10871076
Length = 756
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +2
Query: 155 GYLSKWTNYIHGWQDRFIVLKDSTLSYYK 241
G L KW NY GW+ R+ VL+ LSYYK
Sbjct: 58 GVLHKWVNYGKGWRLRWFVLEGGVLSYYK 86
>05_05_0038 -
21769936-21770199,21770785-21771198,21771274-21771434,
21771544-21771607,21771682-21771864,21772355-21772520,
21773397-21773528,21775085-21775599
Length = 632
Score = 37.1 bits (82), Expect = 0.010
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Frame = +2
Query: 146 ELRGYLSKWTNYIHGWQDRFIVLKDSTLSYYKNELESNLGC-RG----ALCLKKAKVKPH 310
E G+L+K YI W+ R+ VLK L ++K+ + RG A CL +
Sbjct: 39 ERTGWLNKQGEYIKTWRRRWFVLKQGRLFWFKDAAVTRGSVPRGVIPVATCLTVKGAEDV 98
Query: 311 EFDDCRFDVSVSDCVWYLRASNPEEKQQWID 403
F++S Y A + +EK++WI+
Sbjct: 99 INRQFAFELSTPTDTMYFIADSEKEKEEWIN 129
>07_01_0700 + 5280650-5281757,5282509-5282519,5282872-5282967
Length = 404
Score = 32.3 bits (70), Expect = 0.29
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +2
Query: 110 SDSSDLEEGGTPELRGYLSKWTNYIHGWQDRFIVLKDSTLSYY--KNELESNLGCRGALC 283
SD S LE G P KW+ + G +R + + TLSY+ N+L + G +G LC
Sbjct: 221 SDPSFLERGCMPSFDFATEKWSVALQGPLNRILEESNGTLSYHDLANQLMLS-GLKGTLC 279
>10_08_0877 +
21230447-21230815,21231855-21232208,21232417-21232504,
21232844-21233268,21233477-21233632,21233849-21234016,
21234170-21234310,21234393-21234629,21234710-21234823,
21235096-21235272
Length = 742
Score = 31.9 bits (69), Expect = 0.39
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 155 GYLSKWTNYIHGWQDRFIVLKDSTLSYYK 241
G L KWTN GW+ R+ ++ L+Y K
Sbjct: 52 GVLYKWTNIGKGWRPRWFAIRGGVLAYSK 80
>06_01_0989 +
7672764-7672904,7673017-7673067,7673176-7673296,
7673406-7673510,7673963-7674024,7674398-7674515,
7674596-7674932,7675389-7675536,7675632-7675733,
7675824-7675943,7676436-7676519,7676622-7676749,
7677351-7677435,7677566-7677713,7677971-7678047,
7678187-7678243,7678423-7678561,7678642-7678796,
7679003-7679116,7679208-7679275,7679830-7679996,
7680245-7680453
Length = 911
Score = 28.7 bits (61), Expect = 3.6
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +2
Query: 155 GYLSKWTNYIHGWQDRFIVL--KDSTLSYYKNELESNLGCRGALCLKKAKVKPHEFDD 322
GYL K + +GW R+ VL K L Y K + E + RG + L++ ++ E ++
Sbjct: 584 GYLLKKSAKTNGWSRRWFVLNEKSGKLGYTKKQEERHF--RGVITLEECNLEEVEEEE 639
>05_01_0066 - 465526-466107,466541-466741
Length = 260
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/56 (28%), Positives = 30/56 (53%)
Frame = +3
Query: 366 ERLIQRRNSNGLIF*SLSKLNQGTVQVQIVAQMEEVFKGMVLPLHYSLQGHTVTLH 533
E L R + L+F + K +GTV+++I++ +VF G + ++ H V L+
Sbjct: 126 ETLESRLSEVELVFNCVKKALEGTVEIKILSD-AQVFHGKITACTTNVPNHAVLLY 180
>02_05_1156 - 34528204-34529411,34529982-34530122,34530214-34531072
Length = 735
Score = 28.3 bits (60), Expect = 4.8
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Frame = +3
Query: 339 LLATAFGT*--ERLIQRRNSNGLIF*SLSKLNQGTVQVQIVAQMEEVFKGMVLPL 497
LLA AFG R I+ R +N ++ K N+G + Q+V+Q ++ + M++PL
Sbjct: 347 LLAMAFGAVFLTRKIKNRRAN-MLRQMFFKQNRGHLLQQLVSQNTDIAERMIIPL 400
>06_03_0576 -
22443668-22444146,22446239-22446393,22447251-22447331,
22448475-22448618,22449670-22449695,22449748-22449811,
22449905-22449996,22450550-22450780,22451238-22451678,
22451754-22452293
Length = 750
Score = 27.9 bits (59), Expect = 6.3
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +2
Query: 299 VKPHEFDD---CRFDVSVSDCVWYLRASNPEEKQQWIDILESFKV 424
+KPH D CRF D V +LR+ PE +Q I L+ F V
Sbjct: 67 LKPHPARDRDLCRFHAD--DYVAFLRSVTPETQQDQIRALKRFNV 109
>11_06_0696 +
26358713-26359779,26359826-26360110,26360177-26360356,
26360516-26360585,26361051-26361950
Length = 833
Score = 27.5 bits (58), Expect = 8.3
Identities = 22/58 (37%), Positives = 32/58 (55%)
Frame = -3
Query: 174 VHLLRYPRSSGVPPSSKSELSLTVMFSSIILCYVYGSVNIKSTLNKMTPNNEKPNFYL 1
V L YP SS ++ S LSL+ FS+I + + +V I+S LNK N K + +L
Sbjct: 88 VLLPNYPMSSSRKSTACSGLSLSSCFSNIRIRHEV-AVKIRS-LNKKIDNISKDDVFL 143
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,348,566
Number of Sequences: 37544
Number of extensions: 230406
Number of successful extensions: 637
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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