Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11j23f
(584 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37277| Best HMM Match : Oxysterol_BP (HMM E-Value=0) 81 7e-16
SB_3438| Best HMM Match : RVT_1 (HMM E-Value=1.3e-30) 69 8e-13
SB_42254| Best HMM Match : PH (HMM E-Value=5.5e-19) 38 0.006
SB_1926| Best HMM Match : PH (HMM E-Value=1.4e-23) 38 0.008
SB_55241| Best HMM Match : PH (HMM E-Value=6.1e-12) 35 0.043
SB_1906| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.30
SB_939| Best HMM Match : PH (HMM E-Value=6.9e-14) 32 0.30
SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086) 31 0.52
SB_25705| Best HMM Match : PH (HMM E-Value=2e-17) 31 0.69
SB_41939| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_39916| Best HMM Match : RasGAP (HMM E-Value=0) 30 1.6
SB_52655| Best HMM Match : MFS_1 (HMM E-Value=0) 29 2.1
SB_15540| Best HMM Match : DUF29 (HMM E-Value=1.3) 29 2.1
SB_45899| Best HMM Match : Exo_endo_phos (HMM E-Value=0.011) 28 4.9
SB_39154| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_17924| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_32577| Best HMM Match : PH (HMM E-Value=7e-17) 28 6.4
SB_30759| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_13696| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_34951| Best HMM Match : CHASE3 (HMM E-Value=0.4) 27 8.5
>SB_37277| Best HMM Match : Oxysterol_BP (HMM E-Value=0)
Length = 926
Score = 81.0 bits (191), Expect = 7e-16
Identities = 54/176 (30%), Positives = 89/176 (50%), Gaps = 3/176 (1%)
Frame = +2
Query: 65 LPYT*HNMIDENITVSDSSDLEEGGT-PE-LRGYLSKWTNYIHGWQDRFIVLKDSTLSYY 238
L YT + +N+ + ++ +G P+ RG+L KWTNYI G+Q R+ VL + LSYY
Sbjct: 286 LGYTIVELPKQNVKNKEQKNMPDGRVCPDHFRGWLLKWTNYIKGYQRRWFVLSNGLLSYY 345
Query: 239 KNELESNLGCRGALCLKKAKVKPHEFDDCRFDVSVSDC-VWYLRASNPEEKQQWIDILES 415
+N+ E CRG + L A + D C F +S V++LRAS E+Q+W+ LE
Sbjct: 346 RNQAEMAHTCRGTINLAGAFIDTE--DACSFVISNGGTQVFHLRASTEVERQRWVTALEL 403
Query: 416 FKVEXXXXXXXXXXXXXXXLQRHGSATSLQSTGSHGHSTRRLTEKITELETYNELL 583
K + ++ S + H + + L+ K+++L+T N+L+
Sbjct: 404 AKAK--------------AIKMLESDEEEEGASDHAENIKPLSSKLSDLQTCNDLV 445
>SB_3438| Best HMM Match : RVT_1 (HMM E-Value=1.3e-30)
Length = 1405
Score = 68.9 bits (161), Expect(2) = 8e-13
Identities = 26/39 (66%), Positives = 35/39 (89%)
Frame = +2
Query: 305 PHEFDDCRFDVSVSDCVWYLRASNPEEKQQWIDILESFK 421
PHEFD+CRFDVSV+DC++YLRA + EE+Q+W+D LE+ K
Sbjct: 1003 PHEFDECRFDVSVNDCMYYLRAESVEERQKWVDALEAVK 1041
Score = 21.8 bits (44), Expect(2) = 8e-13
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +2
Query: 533 RRLTEKITELETYNELL 583
R L EK+ ELET+ +++
Sbjct: 1044 RGLREKLLELETFRDIV 1060
>SB_42254| Best HMM Match : PH (HMM E-Value=5.5e-19)
Length = 996
Score = 37.9 bits (84), Expect = 0.006
Identities = 24/110 (21%), Positives = 55/110 (50%), Gaps = 3/110 (2%)
Frame = +2
Query: 89 IDENITVSDSSDLEEGGTPELRGYLSKWT--NYIHGWQDRFIVLKDSTLSYYKNELESNL 262
++ ++V +++++ + G +RG +W W+ R+ VLKD+ L+Y++ + E
Sbjct: 378 MERPLSVYEAAEMLQEGYLMMRGCSKEWLADEERRNWKRRWFVLKDNILTYHETDQE-GA 436
Query: 263 GCRGALCLKKA-KVKPHEFDDCRFDVSVSDCVWYLRASNPEEKQQWIDIL 409
G + ++KA +V + F + +++ A + + QW +IL
Sbjct: 437 KALGTIDIRKAMRVVDDGVKENGFSIVTEGRTYHIIAESTYDWNQWYNIL 486
>SB_1926| Best HMM Match : PH (HMM E-Value=1.4e-23)
Length = 998
Score = 37.5 bits (83), Expect = 0.008
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Frame = +2
Query: 155 GYLSKWTNYIHGWQDRFIVLKDSTLSYYKNELESNLGCRGALCLKKAKVKPHEF-DDCRF 331
GYL+K G+Q R+ VLK + L Y++ L+ + G + L+ V+ E + F
Sbjct: 294 GYLNKKGELNRGYQRRWFVLKGNLLYYFERRLDKD--PIGVIILENCNVELAESGEPYAF 351
Query: 332 DVSVSDC---VWYLRASNPEEKQQWIDIL 409
++ + V+ L A PE+ + W+ +L
Sbjct: 352 QINFAGAGARVYVLGADTPEDMEAWMKVL 380
>SB_55241| Best HMM Match : PH (HMM E-Value=6.1e-12)
Length = 734
Score = 35.1 bits (77), Expect = 0.043
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 143 PELRGYLSKWTNYIHGWQDRFIVLKDSTLSYYKN 244
P+ GYLSK + + W+ R+ VLK+ L YY +
Sbjct: 648 PDCHGYLSKQGHKVKSWKRRYCVLKNGYLYYYSD 681
>SB_1906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 106
Score = 32.3 bits (70), Expect = 0.30
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Frame = +2
Query: 308 HEFDDCRFDVSVSDCVW-YLRASNPEEKQQWIDILESFKVEXXXXXXXXXXXXXXXLQRH 484
H D R D+ + + YLRA+ P E+QQW+ + + K LQ
Sbjct: 2 HPTDTVRIDLRIPPEQYIYLRAATPAERQQWVVAMGTAK---ACITQCPSPNDKKPLQTG 58
Query: 485 GSATSLQSTGSHGHSTRRLTEKITELETYNELL 583
S S+ T + T +L EK+ EL Y LL
Sbjct: 59 YSFDSIFYTAA---KTSQLKEKMEELSMYRSLL 88
>SB_939| Best HMM Match : PH (HMM E-Value=6.9e-14)
Length = 1030
Score = 32.3 bits (70), Expect = 0.30
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 137 GTPELRGYLSKWTNYIHGWQDRFIVLKDSTLSYYK 241
G GYL+K I W+ R+ VL+D L Y+K
Sbjct: 637 GDQRKEGYLTKLGGRIKNWKKRWFVLQDGKLYYFK 671
>SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)
Length = 724
Score = 31.5 bits (68), Expect = 0.52
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 176 NYIHGWQDRFIVLKDSTLSYYKNELESN 259
N + WQDR++VL + YYKN L+ +
Sbjct: 68 NKYNMWQDRYLVLHKGCMYYYKNYLDKS 95
>SB_25705| Best HMM Match : PH (HMM E-Value=2e-17)
Length = 409
Score = 31.1 bits (67), Expect = 0.69
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Frame = +2
Query: 149 LRGYLSKWTN---YIHG-WQDRFIVLKDSTLSYYK-NELESNLGCRGALCLKKAKVKPHE 313
L+GYL K YI WQ R+ VL+D + Y+K N E +G + L P
Sbjct: 60 LQGYLCKHRKKGIYIGSKWQKRYCVLRDYAMYYFKDNHAEKQ---KGTIILPGYTPVPAN 116
Query: 314 FDDCRFD-VSVSDCVWYLRASNPEEKQQWI 400
F V +D ++ A + E+ + W+
Sbjct: 117 RSKKEFSLVRENDRIYTFLAESQEDAEMWM 146
>SB_41939| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 819
Score = 30.3 bits (65), Expect = 1.2
Identities = 31/101 (30%), Positives = 41/101 (40%), Gaps = 13/101 (12%)
Frame = +2
Query: 149 LRGYLSKW-TNYIHG---WQDRFIVLKD------STLSYYKNELESNLGCRGALCLKKAK 298
L GYL K T HG W+ R+ V K L YYK+ +G L L
Sbjct: 112 LEGYLEKCSTAEDHGKRDWKKRYFVYKHFLASSIKCLEYYKDRNWRRQEPKGVLTLYPGY 171
Query: 299 VKPHEFDDCR---FDVSVSDCVWYLRASNPEEKQQWIDILE 412
D R FD+ + + L A + EE+ WI +LE
Sbjct: 172 EVMKIHDPKRKFAFDIKTVEHTFRLSAHSEEEENNWILLLE 212
>SB_39916| Best HMM Match : RasGAP (HMM E-Value=0)
Length = 757
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Frame = +2
Query: 191 WQDRFIVLKDSTLSYYKNELESNLGCRGALCLKKA-KVKPHEF-DDCRFDVSVSDCVWYL 364
++ RF VL + L+YYK++ ++ + +K +V F F V D Y+
Sbjct: 420 YKKRFFVLTNKGLAYYKDKGKAQMCSIQLKDIKGVERVGEDSFKQKLMFQVLQPDRPLYI 479
Query: 365 RASNPEEKQQWI 400
+A+N E+++WI
Sbjct: 480 QATNSVEEREWI 491
>SB_52655| Best HMM Match : MFS_1 (HMM E-Value=0)
Length = 839
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -3
Query: 177 FVHLLRYPRSSGVPPSSKSELSLTVMFSSIILCYVYGSV-NIKS 49
+VHL++Y SG+P SEL + + ++ V G V +IKS
Sbjct: 236 YVHLVKYCMESGIPEKDASELFIFIGACALASSIVSGRVLDIKS 279
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -3
Query: 177 FVHLLRYPRSSGVPPSSKSELSLTVMFSSIILCYVYGSV-NIKS 49
+VHL++Y SG+P SEL + + ++ V G V +IKS
Sbjct: 647 YVHLVKYCMESGIPEKDASELFIFIGACALASSIVSGRVLDIKS 690
>SB_15540| Best HMM Match : DUF29 (HMM E-Value=1.3)
Length = 150
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +2
Query: 83 NMIDENITVSDSSDLEEGGTPEL--RGYLSKWTNYIHGWQDRFIVLKDSTLSYYKN 244
N +D++I ++ + E+ +GYL K + + +DR+ VLK LSY+ N
Sbjct: 78 NGVDKSIYKEGLDEMRDYVIHEVIKQGYLIKKGHMVKSMKDRWFVLKAGHLSYFTN 133
>SB_45899| Best HMM Match : Exo_endo_phos (HMM E-Value=0.011)
Length = 707
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +2
Query: 206 IVLKDSTLSYYKNELESNLGCRGALCLKKAKVKPHEFDDCRFDVSVS 346
++L+D+T Y +L CRG C KK + P D R VS++
Sbjct: 380 LLLEDNTRYPYMERTRQHLKCRGVKC-KKLYLLPRVNSDQRLFVSLT 425
>SB_39154| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 147
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/72 (23%), Positives = 33/72 (45%)
Frame = +2
Query: 35 ILFKVDLMLTLPYT*HNMIDENITVSDSSDLEEGGTPELRGYLSKWTNYIHGWQDRFIVL 214
I+ +D ++T+ NMID I + DS + G + + +W Y+ + + +
Sbjct: 75 IITMIDNIITMNVKSTNMIDNTIIMIDSITIIIGYVLNIEKPMKQWFEYLVNKRIIILCV 134
Query: 215 KDSTLSYYKNEL 250
+ LS NE+
Sbjct: 135 HEYCLSITSNEI 146
>SB_17924| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 532
Score = 27.9 bits (59), Expect = 6.4
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = +3
Query: 477 KGMVLPLHYSLQGHTVTLHVASQRKSLSWKRTMSF 581
K +V P H+ G T + +A + L W R + +
Sbjct: 84 KVLVSPYHHLSNGQTCAVDMAEDKAELGWSRALKY 118
>SB_32577| Best HMM Match : PH (HMM E-Value=7e-17)
Length = 1248
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +2
Query: 131 EGGTPELRGYLSKWTNYIHGWQDRFIVLKDSTLSYYK 241
E G+ ++ GYL HGW+ + VLKD+ L YK
Sbjct: 1170 ESGS-QVSGYLRCKRPGKHGWKRLWFVLKDNVLYTYK 1205
>SB_30759| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 225
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -3
Query: 114 SLTVMFSSIILCYVYGSVNIKSTLNKMTPNNEKPN 10
S M S +L + ++ ++S + K TPN++KPN
Sbjct: 60 SSATMDSCFVLIFGKNTLTLESLVLKHTPNSQKPN 94
>SB_13696| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 676
Score = 27.5 bits (58), Expect = 8.5
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +2
Query: 191 WQDRFIVLKDSTLSYYKNELESNLG 265
W+ +++V+KD L YYK + G
Sbjct: 102 WKRKWVVVKDQRLYYYKTSFDPEAG 126
>SB_34951| Best HMM Match : CHASE3 (HMM E-Value=0.4)
Length = 375
Score = 27.5 bits (58), Expect = 8.5
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 356 WYLRASNPEEKQQWIDILE 412
+Y+ A N EEK++WI + E
Sbjct: 42 YYITAENEEEKKEWIQMFE 60
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,992,893
Number of Sequences: 59808
Number of extensions: 280958
Number of successful extensions: 733
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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