Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11j23f
(584 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79754-5|CAB02094.2| 573|Caenorhabditis elegans Hypothetical pr... 96 1e-20
AL117202-14|CAB57894.2| 766|Caenorhabditis elegans Hypothetical... 71 5e-13
AF000195-7|AAC24270.1| 676|Caenorhabditis elegans Oxysterol bin... 59 3e-09
AF067216-14|AAC17517.4| 729|Caenorhabditis elegans Hypothetical... 34 0.085
AC084159-8|AAK39361.2| 655|Caenorhabditis elegans Hypothetical ... 32 0.34
Z97190-2|CAM06586.1| 650|Caenorhabditis elegans Hypothetical pr... 31 0.46
Z66564-7|CAA91472.2| 650|Caenorhabditis elegans Hypothetical pr... 31 0.46
Z68749-1|CAA92960.2| 309|Caenorhabditis elegans Hypothetical pr... 29 1.8
U29244-10|AAC71091.2| 908|Caenorhabditis elegans Hypothetical p... 28 4.2
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ... 28 5.6
Z70310-1|CAA94366.1| 552|Caenorhabditis elegans Hypothetical pr... 27 7.4
U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated p... 27 9.8
U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated p... 27 9.8
M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related... 27 9.8
>Z79754-5|CAB02094.2| 573|Caenorhabditis elegans Hypothetical
protein F25H2.6 protein.
Length = 573
Score = 96.3 bits (229), Expect = 1e-20
Identities = 49/147 (33%), Positives = 77/147 (52%), Gaps = 5/147 (3%)
Frame = +2
Query: 155 GYLSKWTNYIHGWQDRFIVLKDSTLSYYKNELESNLGCRGALCLKKAKVKPHEFDDCRFD 334
G + KWTNY++GWQDR+ + + L YY ++ E + GCRG++ LK A + HEFD+ F
Sbjct: 11 GVMKKWTNYVNGWQDRYFEITEGNLVYYLSKAEKSHGCRGSIFLKSAIIAAHEFDENEFS 70
Query: 335 VSVSD-CVWYLRASNPEEKQQWIDILESFKVEXXXXXXXXXXXXXXXLQRHGSATSLQST 511
+S+ + VWYL+A N + K W + S E R+ S +S+ +T
Sbjct: 71 ISMGENVVWYLKAENSQSKLLW---MRSVVRETVQNDSDYSSTSTKSHSRNPSVSSVLAT 127
Query: 512 GSH----GHSTRRLTEKITELETYNEL 580
+ ST+ K++ELE Y +
Sbjct: 128 NNQKSDDNESTKLFATKLSELEAYRTM 154
>AL117202-14|CAB57894.2| 766|Caenorhabditis elegans Hypothetical
protein Y47D3A.17a protein.
Length = 766
Score = 71.3 bits (167), Expect = 5e-13
Identities = 35/104 (33%), Positives = 63/104 (60%), Gaps = 1/104 (0%)
Frame = +2
Query: 104 TVSDSSDLEEGGTPELRGYLSKWTNYIHGWQDRFIVL-KDSTLSYYKNELESNLGCRGAL 280
++S ++ E + E G+L+KWTNY+ G++ R+ VL ++TLSYY+N E CRG++
Sbjct: 48 SLSSINNFEHLASVEKAGWLNKWTNYLKGYRQRWFVLDSNATLSYYRNPSEVGHTCRGSI 107
Query: 281 CLKKAKVKPHEFDDCRFDVSVSDCVWYLRASNPEEKQQWIDILE 412
L++A+V + C +S ++++ N ++QQW + LE
Sbjct: 108 NLQEARVHTDKTTSC-IVISGQSQTFHVKPQNEMDRQQWTNSLE 150
>AF000195-7|AAC24270.1| 676|Caenorhabditis elegans Oxysterol
binding protein (osbp)related protein 4, isoform a
protein.
Length = 676
Score = 58.8 bits (136), Expect = 3e-09
Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Frame = +2
Query: 149 LRGYLSKWTNYIHGWQDRFIVLKDSTLSYYKNELESNLG-CRGALCLKKAKVKPHEFDDC 325
+ G LSKWTN +HGWQ R+ +++ TL YY + + G RG + L A V ++
Sbjct: 1 MEGPLSKWTNMVHGWQYRWFKIENDTLLYYTSREKMLKGQQRGQIRLTGAVVGIDGENNS 60
Query: 326 RFDVSVSDCVWYLRASNPEEKQQWIDILES 415
F ++V ++++ + E+ QW+ ILE+
Sbjct: 61 LFTITVEGKTFHMQGRDLRERNQWVRILEN 90
>AF067216-14|AAC17517.4| 729|Caenorhabditis elegans Hypothetical
protein C35E7.1 protein.
Length = 729
Score = 33.9 bits (74), Expect = 0.085
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +2
Query: 179 YIHGWQDR-FIVLKDSTLSYYKNELESNLGCRGALCLKKAKVKPHEFDD 322
+I +DR +++KD ++ K E +S + C A+ K AK+ P E+D+
Sbjct: 286 FIQMSKDRPIVIMKDEDGNFVKQEYDSLIDCFVAISPKDAKILPREYDE 334
>AC084159-8|AAK39361.2| 655|Caenorhabditis elegans Hypothetical
protein Y73B3A.3 protein.
Length = 655
Score = 31.9 bits (69), Expect = 0.34
Identities = 15/41 (36%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Frame = +3
Query: 66 FHTRNTI*LTKTSQ-SAIVLI*KRAELLNFADT*ANGQTIY 185
FH + + L+ ++ S I++I +RA+ + F DT +GQT+Y
Sbjct: 354 FHVKTHLLLSLSNAFSIIIIIVQRAQAVGFTDTSGDGQTVY 394
>Z97190-2|CAM06586.1| 650|Caenorhabditis elegans Hypothetical
protein F52D10.6 protein.
Length = 650
Score = 31.5 bits (68), Expect = 0.46
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +2
Query: 122 DLEEGGTPELRGYLSKWTNYIHGWQDRFIVLKDSTLSYYKNELE 253
D+ + T + GYL + GWQD ++V+ TL +Y+N E
Sbjct: 531 DVNKMITNTMCGYLKRKLRNSSGWQDLWVVMCCHTLYFYRNHNE 574
>Z66564-7|CAA91472.2| 650|Caenorhabditis elegans Hypothetical
protein F52D10.6 protein.
Length = 650
Score = 31.5 bits (68), Expect = 0.46
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +2
Query: 122 DLEEGGTPELRGYLSKWTNYIHGWQDRFIVLKDSTLSYYKNELE 253
D+ + T + GYL + GWQD ++V+ TL +Y+N E
Sbjct: 531 DVNKMITNTMCGYLKRKLRNSSGWQDLWVVMCCHTLYFYRNHNE 574
>Z68749-1|CAA92960.2| 309|Caenorhabditis elegans Hypothetical
protein F56H11.3 protein.
Length = 309
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Frame = -3
Query: 177 FVHLLRYP----RSSGVPPSSKSELSLTVMFSSIILCYVYGSVNIKSTLNKMTPNNEKPN 10
FVH YP RS + +K +++TV+ + +C++YG + +L + P
Sbjct: 208 FVHAFMYPYYFTRSMNIKVPAKISMAVTVLQLTQFMCFIYGCTLMYYSLATNQYTCDTPM 267
Query: 9 FYL 1
F L
Sbjct: 268 FVL 270
>U29244-10|AAC71091.2| 908|Caenorhabditis elegans Hypothetical
protein ZK1248.10 protein.
Length = 908
Score = 28.3 bits (60), Expect = 4.2
Identities = 17/71 (23%), Positives = 34/71 (47%)
Frame = +2
Query: 203 FIVLKDSTLSYYKNELESNLGCRGALCLKKAKVKPHEFDDCRFDVSVSDCVWYLRASNPE 382
+ L DST Y + ++ C G + L A + RF++ ++ V L S+ +
Sbjct: 41 WFALCDSTPYLYWYKDSDDIKCIGRVSLSGAAFTYDPREKGRFEIHSNNEVIALECSSDK 100
Query: 383 EKQQWIDILES 415
++ +W+ L+S
Sbjct: 101 QRNEWMKALQS 111
>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
protein F21E9.1 protein.
Length = 1170
Score = 27.9 bits (59), Expect = 5.6
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = -3
Query: 177 FVHLLRYPRSSGVPPSSKSELSLTVMFSSIILCYVYGSVNI 55
FV YP SSGVP S S L ++F + +L + ++NI
Sbjct: 869 FVSKNSYPISSGVPQGSVSGPLLFILFINNLLIDLAPTINI 909
>Z70310-1|CAA94366.1| 552|Caenorhabditis elegans Hypothetical
protein R11A8.1 protein.
Length = 552
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +2
Query: 98 NITVSDSSDLEEGGTPELRGYLSKWTNYIHGWQDRFIVLKDSTLSYYKNELE 253
N +S+ ++E+ + L WTNY + F D YY+NE++
Sbjct: 361 NDKISEVYEIEKFYVEQFIPALENWTNYRENPTEFFDTNADKFEEYYENEMK 412
>U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated
protein 104, isoforma protein.
Length = 1584
Score = 27.1 bits (57), Expect = 9.8
Identities = 15/72 (20%), Positives = 35/72 (48%)
Frame = +2
Query: 98 NITVSDSSDLEEGGTPELRGYLSKWTNYIHGWQDRFIVLKDSTLSYYKNELESNLGCRGA 277
NI V + + G +GY++ GW R+++++ + +++ + +L RG
Sbjct: 1446 NILVPEVLEERVGVVVSKKGYMNFLEEKTQGWTRRWVIVRRPYILLFRD--DRDLVIRGI 1503
Query: 278 LCLKKAKVKPHE 313
+ L A+++ E
Sbjct: 1504 INLANARIEHSE 1515
>U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated
protein 104, isoformb protein.
Length = 1628
Score = 27.1 bits (57), Expect = 9.8
Identities = 15/72 (20%), Positives = 35/72 (48%)
Frame = +2
Query: 98 NITVSDSSDLEEGGTPELRGYLSKWTNYIHGWQDRFIVLKDSTLSYYKNELESNLGCRGA 277
NI V + + G +GY++ GW R+++++ + +++ + +L RG
Sbjct: 1490 NILVPEVLEERVGVVVSKKGYMNFLEEKTQGWTRRWVIVRRPYILLFRD--DRDLVIRGI 1547
Query: 278 LCLKKAKVKPHE 313
+ L A+++ E
Sbjct: 1548 INLANARIEHSE 1559
>M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related
protein protein.
Length = 1584
Score = 27.1 bits (57), Expect = 9.8
Identities = 15/72 (20%), Positives = 35/72 (48%)
Frame = +2
Query: 98 NITVSDSSDLEEGGTPELRGYLSKWTNYIHGWQDRFIVLKDSTLSYYKNELESNLGCRGA 277
NI V + + G +GY++ GW R+++++ + +++ + +L RG
Sbjct: 1446 NILVPEVLEERVGVVVSKKGYMNFLEEKTQGWTRRWVIVRRPYILLFRD--DRDLVIRGI 1503
Query: 278 LCLKKAKVKPHE 313
+ L A+++ E
Sbjct: 1504 INLANARIEHSE 1515
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,917,348
Number of Sequences: 27780
Number of extensions: 214747
Number of successful extensions: 632
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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