Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11j23f
         (584 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   3.9  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   3.9  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   8.9  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/44 (20%), Positives = 22/44 (50%)
 Frame = -3

Query: 132 SSKSELSLTVMFSSIILCYVYGSVNIKSTLNKMTPNNEKPNFYL 1
           S +  + LT+++  I +  ++G++   + + K        N+YL
Sbjct: 36  SMRMVIPLTIIYMIIFVTGIFGNITTCTVIIKNPAMQTATNYYL 79


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 432 PDSTLKDSRISIHCCFSSGL 373
           P  + ++SR S+ C  +SGL
Sbjct: 10  PVKSFRESRCSVRCSAASGL 29


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +2

Query: 482 HGSATSLQSTGSHGHSTRRLTEKITELE 565
           H    S+Q  G  G   RRL   + E+E
Sbjct: 226 HLRIISMQMGGDLGQVYRRLVHAVNEIE 253


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,933
Number of Sequences: 438
Number of extensions: 2510
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)