Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11j17r
         (303 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        28   0.26 
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    24   4.3  
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch...    24   5.6  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    23   7.5  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    23   9.9  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    23   9.9  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    23   9.9  

>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 28.3 bits (60), Expect = 0.26
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 144  TQGSSVQWAFSGHPYSVVLASRAITATIRNTIKYCLA 254
            T  SS +WA  GH  +V  A  ++  +I+  ++ C+A
Sbjct: 1174 TGSSSSEWAVRGHKENVEKAIASLEKSIKQVMENCIA 1210


>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 158 SPMGIFRASIFGSAGLESHHGDNQEHD 238
           SP  +F  S+   AG+E  H D Q H+
Sbjct: 12  SPRVLFCVSVAAVAGVEVEHVDVQPHN 38


>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 681

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -3

Query: 175 ENAHWTDDPCVRTCDDPYLTNTACVGALIQTCHCNDGLV 59
           +N HW  DP     D    T+   VG+LI      + LV
Sbjct: 352 DNYHWMPDPIDAAPDFKKPTDRDVVGSLISIFKSKEPLV 390


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +3

Query: 231  NTIKYCLAAIFVIFF 275
            N +K C+ +IF++FF
Sbjct: 1389 NWLKRCIISIFIVFF 1403


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +2

Query: 170  IFRASIFGSAGLESHHGDNQEHDKVLFGGHLRDIFQTTA 286
            IF   IFG  G+E    D + + K + G    D ++  A
Sbjct: 1740 IFVDEIFGEVGVEKDSEDYKSNVKEIKGNKSYDSYEIVA 1778


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -3

Query: 145 VRTCDDPYLTNTACVGALIQTCHCNDGLVF 56
           V T  D  L NT CV    +    + GLVF
Sbjct: 249 VYTTPDMQLQNTYCVDGTFELLFSSFGLVF 278


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 152  VISPMGIFRASIFGSAGLESHHGDNQEHDKVL 247
            VISP  + + S+FGS  +++    +    K+L
Sbjct: 2202 VISPKALTKESLFGSMNMDTREWTDGVFTKLL 2233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,105,643
Number of Sequences: 5004
Number of extensions: 17650
Number of successful extensions: 49
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)