Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11j17f
(351 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16) 34 0.028
SB_35108| Best HMM Match : AT_hook (HMM E-Value=0.15) 29 1.4
SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_17530| Best HMM Match : EGF_CA (HMM E-Value=0) 28 1.9
SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.9
SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.2
SB_58993| Best HMM Match : EGF_CA (HMM E-Value=0) 27 4.3
SB_43678| Best HMM Match : Ribonuclease_BN (HMM E-Value=0.81) 27 4.3
SB_23463| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.3
SB_12758| Best HMM Match : EGF (HMM E-Value=2.5e-15) 27 5.7
SB_3676| Best HMM Match : Cuticle_2 (HMM E-Value=3.2) 27 5.7
SB_55591| Best HMM Match : TIL (HMM E-Value=4.2e-09) 27 5.7
SB_20082| Best HMM Match : DUF378 (HMM E-Value=4.1) 27 5.7
SB_25588| Best HMM Match : PAE (HMM E-Value=1.5e-31) 26 7.5
SB_19021| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.5
SB_9163| Best HMM Match : XS (HMM E-Value=0.84) 26 7.5
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.5
SB_2368| Best HMM Match : Patched (HMM E-Value=8.6e-08) 26 7.5
SB_41134| Best HMM Match : EGF_CA (HMM E-Value=0) 26 9.9
SB_30013| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.9
SB_23918| Best HMM Match : rve (HMM E-Value=0.013) 26 9.9
SB_19217| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.9
SB_45009| Best HMM Match : RCC1 (HMM E-Value=7.6e-21) 26 9.9
SB_29298| Best HMM Match : GFO_IDH_MocA_C (HMM E-Value=2.3e-06) 26 9.9
>SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)
Length = 705
Score = 34.3 bits (75), Expect = 0.028
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Frame = +3
Query: 123 CPENA--HWTDDPCVRTCDDPYLTNTACVGALIQTCHCNDGLV--FNADRK--CVPISDC 284
CPENA + C TC DP N C ++ C C + V NA K C+ +C
Sbjct: 180 CPENAVFKYCTSACPETCHDPPGRNKTCSMRCVEGCECKEEFVQRVNAVGKVQCIKRKEC 239
>SB_35108| Best HMM Match : AT_hook (HMM E-Value=0.15)
Length = 1600
Score = 28.7 bits (61), Expect = 1.4
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 177 PYLTNTACVGALIQTCHCNDGLVFNADRKCVPIS 278
PY C+G L ++ + DG++ DR VP+S
Sbjct: 561 PYGEPVTCLGHLCESIYAQDGVLLLNDRVVVPMS 594
>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4924
Score = 28.7 bits (61), Expect = 1.4
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Frame = +3
Query: 186 TNTA---CVGAL-IQTCHCNDGLVF-NADRKCVPISDC 284
TNT C+ L TC C G F N+ R+C+ I++C
Sbjct: 2113 TNTCPGRCINRLGSYTCDCPRGYTFDNSSRRCIDINEC 2150
>SB_17530| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 165
Score = 28.3 bits (60), Expect = 1.9
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +3
Query: 189 NTACVGALIQ-TCHCNDGLVFNADRKCVPISDC 284
N C +L TC C +G N+ KC +++C
Sbjct: 15 NEVCANSLGSFTCQCAEGYERNSQGKCADVNEC 47
>SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1465
Score = 28.3 bits (60), Expect = 1.9
Identities = 14/45 (31%), Positives = 16/45 (35%)
Frame = +3
Query: 105 STTEYGCPENAHWTDDPCVRTCDDPYLTNTACVGALIQTCHCNDG 239
S C CVR P C+G L QT HC +G
Sbjct: 686 SLCSVSCSNGTRTRSRECVRKSTSPADYIARCIGELNQTKHCFEG 730
>SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1530
Score = 27.5 bits (58), Expect = 3.2
Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 3/70 (4%)
Frame = +3
Query: 84 AVMALEASTTEYGCPENAHWTD--DPCVRTCDDPYLTNTACVGALIQTCHCNDGLVFNAD 257
AV A+ CP ++ C R C + AC + C C +G + D
Sbjct: 743 AVKAVFLMVEPVTCPSGMEHSECSSACPRDCSNMNSDPNACNSKCVDGCFCPEGKI--QD 800
Query: 258 R-KCVPISDC 284
R KCV C
Sbjct: 801 RGKCVDPGQC 810
Score = 26.2 bits (55), Expect = 7.5
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +3
Query: 156 CVRTCDDPYLTNTACVGALIQTCHCNDGLVFNADRKCVPISDC 284
C TC++ + N + C+C DGL+ + + CV C
Sbjct: 1231 CGITCENLHPINGG-ERPCVSGCYCPDGLIMHDNGTCVQSMQC 1272
>SB_58993| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 541
Score = 27.1 bits (57), Expect = 4.3
Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +3
Query: 219 TCHCNDGLVFNADRK-CVPISDC*NV 293
TC C G +ADR+ C+ +++C +V
Sbjct: 19 TCQCIAGYTLSADRRHCIDVNECQDV 44
>SB_43678| Best HMM Match : Ribonuclease_BN (HMM E-Value=0.81)
Length = 468
Score = 27.1 bits (57), Expect = 4.3
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = -3
Query: 256 SALKTKPSLQWQV*MR-APTQAVLVRYGSSQVLTQGSSVQWAFSGHPYSVVLASRAITAT 80
S + S+ W V + + T V V + + V+T SSV W F+ YSV L ++++
Sbjct: 133 SVVTISSSVTWVVTVSFSVTWVVTVSFNVTWVVTVCSSVTWVFT-VSYSVTLVV-TVSSS 190
Query: 79 IRNTIKYCLAAIFVI 35
+ + C + +V+
Sbjct: 191 VTWVVTVCSSVTWVV 205
Score = 26.2 bits (55), Expect = 7.5
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = -3
Query: 256 SALKTKPSLQWQV*MR-APTQAVLVRYGSSQVLTQGSSVQWAFSGHPYSVVLASRAITAT 80
S + S+ W V + + T V V + + V+T SSV W F+ YSV L ++++
Sbjct: 323 SVVTVSSSVTWVVTVSFSVTWVVTVSFNVTWVVTVCSSVTWVFT-VSYSVTLVV-TVSSS 380
Query: 79 IRNTIKYCLAAIFVI 35
+ + C + V+
Sbjct: 381 VTWVVTVCSSVTCVV 395
>SB_23463| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1430
Score = 27.1 bits (57), Expect = 4.3
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = -3
Query: 205 PTQAVLVRYGSSQVLTQGSSVQWAFSGHPYSVVLASRAITATIRNT 68
P+Q +L ++ ++T ++F+ YSVV + +T TI T
Sbjct: 664 PSQVLLGTSATTVIITNDDKAIFSFAAASYSVVEDTGYVTVTINKT 709
>SB_12758| Best HMM Match : EGF (HMM E-Value=2.5e-15)
Length = 165
Score = 26.6 bits (56), Expect = 5.7
Identities = 13/39 (33%), Positives = 14/39 (35%)
Frame = +3
Query: 123 CPENAHWTDDPCVRTCDDPYLTNTACVGALIQTCHCNDG 239
CP C R CD P CV +TC C G
Sbjct: 53 CPAGFTGDGRACTRICDHPCPYGMTCVAP--RTCRCPKG 89
>SB_3676| Best HMM Match : Cuticle_2 (HMM E-Value=3.2)
Length = 322
Score = 26.6 bits (56), Expect = 5.7
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = +3
Query: 30 KNITKMAAKQYFIVF--LIVAVMAL-EASTTEYGCPENA 137
KN+T A+QY I F L++A+ A AS ++ P +A
Sbjct: 113 KNMTMQGARQYSIAFSDLVLAISAFYSASKLQFASPYSA 151
>SB_55591| Best HMM Match : TIL (HMM E-Value=4.2e-09)
Length = 133
Score = 26.6 bits (56), Expect = 5.7
Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Frame = +3
Query: 123 CPENAHWTD--DPCVRTCDDPYLTNTACVGALIQTCHCNDGLVFNADR-KCVPISDC 284
CP ++ C R C + AC + C C +G + DR KCV C
Sbjct: 57 CPSGMEHSECNSACPRDCSNMNSDPNACNSKCVDGCFCPEGKI--QDRGKCVDPGQC 111
>SB_20082| Best HMM Match : DUF378 (HMM E-Value=4.1)
Length = 568
Score = 26.6 bits (56), Expect = 5.7
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +3
Query: 156 CVRTCDDPYLTNTACVGALIQTCHCNDGLVFNA 254
C RTC L +T C+ A + NDG VF A
Sbjct: 238 CDRTCSYWDLVSTTCMYARVTHFFDNDGTVFLA 270
>SB_25588| Best HMM Match : PAE (HMM E-Value=1.5e-31)
Length = 996
Score = 26.2 bits (55), Expect = 7.5
Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 11/71 (15%)
Frame = +3
Query: 102 ASTTEYGCPENAHWTDDPCVRTCDD-PYL---------TNTACVGALIQTCHCND-GLVF 248
A T CPE W+ C CD P + + CV + CN G V
Sbjct: 826 ADTQPKKCPEGHRWSASSCSCMCDKAPEVCPVGKYWSQRSCGCVCSAHVVGACNQHGKVT 885
Query: 249 NADRKCVPISD 281
N+D +CV SD
Sbjct: 886 NSDCECVDQSD 896
>SB_19021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 590
Score = 26.2 bits (55), Expect = 7.5
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Frame = +3
Query: 138 HWTDDPCVRTCDDPYLTN-TACVG--ALIQTCHCNDGLVFNA 254
H+ DP R D + T C G A I+ HC G+ +NA
Sbjct: 179 HYDSDPFPRYSPDNINKHGTRCAGEVAAIKNTHCGVGVAYNA 220
>SB_9163| Best HMM Match : XS (HMM E-Value=0.84)
Length = 424
Score = 26.2 bits (55), Expect = 7.5
Identities = 12/48 (25%), Positives = 21/48 (43%)
Frame = -2
Query: 164 PHAGVISPMGIFRASIFGSAGLESHHGDNQEHDKVLFGGHLRDIFQTT 21
P + + + + + GS+G+ HHG+N E V G +T
Sbjct: 95 PSSSIDPHVSVITSQTQGSSGVPVHHGNNPEQISVETGSKAASTVMST 142
>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5659
Score = 26.2 bits (55), Expect = 7.5
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +3
Query: 189 NTACVGALIQ-TCHCNDGLVFNADRKCVPISDC 284
N C +L TC C +G ++ KC +++C
Sbjct: 472 NEVCANSLGSFTCQCAEGYERDSQGKCADVNEC 504
>SB_2368| Best HMM Match : Patched (HMM E-Value=8.6e-08)
Length = 1420
Score = 26.2 bits (55), Expect = 7.5
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Frame = -3
Query: 121 PYSV--VLASRAITATIR--NTIKYCLAAIFVIFFRL 23
PYSV V + +TA + YC+AA+FV+ F L
Sbjct: 1243 PYSVFYVFYEQYLTAATNAWKNLLYCIAAVFVVTFLL 1279
>SB_41134| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 802
Score = 25.8 bits (54), Expect = 9.9
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 6/60 (10%)
Frame = +3
Query: 123 CPEN--AHWTDDPCVRTCDDPYLTNTACVGALIQT---CHCNDGLVFNADR-KCVPISDC 284
CP+ + W + C DP + + Q C C +G + N+D C I +C
Sbjct: 691 CPQGYRSDWNKCVDIDECADPQVNKCQHICNNTQASFHCECREGYILNSDGITCSDIDEC 750
>SB_30013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 79
Score = 25.8 bits (54), Expect = 9.9
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = +3
Query: 114 EYGCPENAHWTDDPCVRTCD-DPYLT 188
+Y C + DPC RT D +PY T
Sbjct: 10 DYPCAHDTDQPSDPCQRTADQNPYPT 35
>SB_23918| Best HMM Match : rve (HMM E-Value=0.013)
Length = 1785
Score = 25.8 bits (54), Expect = 9.9
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = +3
Query: 114 EYGCPENAHWTDDPCVRTCD-DPYLT 188
+Y C + DPC RT D +PY T
Sbjct: 163 DYPCAHDTDQPSDPCQRTADQNPYPT 188
>SB_19217| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 468
Score = 25.8 bits (54), Expect = 9.9
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = +3
Query: 114 EYGCPENAHWTDDPCVRTCD-DPYLT 188
+Y C + DPC RT D +PY T
Sbjct: 10 DYPCAHDTDQPSDPCQRTADQNPYPT 35
>SB_45009| Best HMM Match : RCC1 (HMM E-Value=7.6e-21)
Length = 595
Score = 25.8 bits (54), Expect = 9.9
Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Frame = +3
Query: 9 LLESCSLKNITKMAAKQYFIVFLIVAVMALEASTTEYGCPENAHWTDDPCVRTCDDPYLT 188
L+++ K IT+ + VF+ + + +++ GC + W+ P + +
Sbjct: 129 LVDTLKGKAITRACCGDKYSVFVTDNGIVMTCGSSDTGCLGHGDWSSTPRPKLIEGLLSV 188
Query: 189 NTACV--GALIQTCHCNDGLVF 248
+ V G C++GLVF
Sbjct: 189 DVTAVSCGPHHVAVVCSEGLVF 210
>SB_29298| Best HMM Match : GFO_IDH_MocA_C (HMM E-Value=2.3e-06)
Length = 805
Score = 25.8 bits (54), Expect = 9.9
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Frame = +3
Query: 147 DDPCVRTCDDPYLTNTACVG---ALI--QTCHCNDGLVFN-ADRKCVPISDC 284
D C R C PY +T VG A++ C +G + A R C P+ DC
Sbjct: 246 DKQCRRGCSKPYNGSTLFVGNGKAVMSRSDIFCTNGKLSGIAVRMCQPLYDC 297
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,596,449
Number of Sequences: 59808
Number of extensions: 168250
Number of successful extensions: 581
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 535585339
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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