Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11j17f
(351 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79756-10|CAL36507.1| 80|Caenorhabditis elegans Hypothetical p... 44 2e-05
U50311-10|AAA92314.1| 135|Caenorhabditis elegans Inhibitor of s... 40 7e-04
U50311-8|AAA92312.1| 145|Caenorhabditis elegans Hypothetical pr... 38 0.002
U42830-3|AAC48275.1| 195|Caenorhabditis elegans Hypothetical pr... 36 0.011
Z98877-16|CAH60800.1| 975|Caenorhabditis elegans Hypothetical p... 34 0.033
U50311-11|AAN84861.1| 86|Caenorhabditis elegans Inhibitor of s... 33 0.057
U50311-9|AAA92313.1| 137|Caenorhabditis elegans Hypothetical pr... 33 0.076
Z98877-6|CAD56617.1| 432|Caenorhabditis elegans Hypothetical pr... 31 0.31
Z98877-5|CAD56616.1| 731|Caenorhabditis elegans Hypothetical pr... 31 0.31
Z98877-4|CAB54473.2| 796|Caenorhabditis elegans Hypothetical pr... 31 0.31
Z98877-3|CAB54472.2| 537|Caenorhabditis elegans Hypothetical pr... 31 0.31
Z66561-8|CAI79121.1| 137|Caenorhabditis elegans Hypothetical pr... 30 0.54
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 29 0.71
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 29 0.71
AC024817-39|AAP68916.1| 128|Caenorhabditis elegans Hypothetical... 29 0.71
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr... 29 0.94
AF016668-4|AAO12440.1| 222|Caenorhabditis elegans Hypothetical ... 28 1.6
Z99288-10|CAB16552.2| 338|Caenorhabditis elegans Hypothetical p... 27 2.9
Z81483-7|CAB03964.2| 338|Caenorhabditis elegans Hypothetical pr... 27 2.9
Z82280-5|CAB05266.1| 294|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z81458-4|CAB03824.1| 623|Caenorhabditis elegans Hypothetical pr... 26 8.7
Z71266-3|CAA95840.1| 292|Caenorhabditis elegans Hypothetical pr... 26 8.7
Z19157-2|CAA79568.1| 826|Caenorhabditis elegans Hypothetical pr... 26 8.7
U58730-1|AAC48058.1| 514|Caenorhabditis elegans Inward rectifyi... 26 8.7
U28737-5|AAA68274.1| 684|Caenorhabditis elegans Na/h exchanger ... 26 8.7
U28737-4|AAM48522.1| 749|Caenorhabditis elegans Na/h exchanger ... 26 8.7
DQ340625-1|ABC65813.1| 292|Caenorhabditis elegans chondroitin p... 26 8.7
AL132858-16|CAB60486.2| 538|Caenorhabditis elegans Hypothetical... 26 8.7
AL117207-25|CAB61042.2| 538|Caenorhabditis elegans Hypothetical... 26 8.7
AF497827-1|AAM18105.1| 684|Caenorhabditis elegans putative Na-H... 26 8.7
AF497826-1|AAM18104.1| 749|Caenorhabditis elegans putative Na-H... 26 8.7
>Z79756-10|CAL36507.1| 80|Caenorhabditis elegans Hypothetical
protein F53C11.9 protein.
Length = 80
Score = 44.4 bits (100), Expect = 2e-05
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Frame = +3
Query: 57 QYFIVFLIVAVMALEASTTEYGCPENAHWTD--DPCVRTCDDPYLTNTACVGALIQTCHC 230
+YF+ L+V + L + + C EN + D PC RTC++P N C+ C C
Sbjct: 2 KYFLFSLLV-LATLSFALAKNQCGENEIFNDCGSPCDRTCENP---NPMCIQMCKARCEC 57
Query: 231 NDGLVFNAD-RKCVPISDC 284
G V +++ +KC+ + C
Sbjct: 58 KQGFVVDSNTKKCIDLKKC 76
>U50311-10|AAA92314.1| 135|Caenorhabditis elegans Inhibitor of
serine protease likeprotein protein 2, isoform a
protein.
Length = 135
Score = 39.5 bits (88), Expect = 7e-04
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = +3
Query: 66 IVFLIVAVMALEASTTEYGCPENAHWTDDPCVRTCDDPY-LTNTACVG-ALIQTCHCNDG 239
I+ +I ++A+ +T C N C TC+ T AC ++ TC C DG
Sbjct: 3 ILVIITCIVAVATATKT--CEANEELVS--CHNTCEPQCGYTPKACTEQCIMNTCDCKDG 58
Query: 240 LVFNADRKCVPISDC 284
V N+ KCV +S+C
Sbjct: 59 FVRNSLGKCVEVSEC 73
>U50311-8|AAA92312.1| 145|Caenorhabditis elegans Hypothetical
protein C25E10.7 protein.
Length = 145
Score = 38.3 bits (85), Expect = 0.002
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Frame = +3
Query: 87 VMALEASTTEYGCPENAHWTD--DPCVRTCDDPYLTNTACVGALIQTCHCNDGLVFNADR 260
V LE + CPE+ + C TCDDPY T+ + C C GLV N+
Sbjct: 66 VRRLECTAETSRCPEDEVFQTCGTLCQPTCDDPYPTSCEHDRCIRNVCRCLPGLVRNSG- 124
Query: 261 KCVPISDC*N 290
C + +C N
Sbjct: 125 TCTSLDECDN 134
>U42830-3|AAC48275.1| 195|Caenorhabditis elegans Hypothetical
protein C53B7.2 protein.
Length = 195
Score = 35.5 bits (78), Expect = 0.011
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Frame = +3
Query: 63 FIVFLIVAVMALEA----STTEYGCPENAHWTD--DPCVRTCDDPYLTNTAC-VGALIQT 221
F + L+ V+ +++ +TT+ C N ++ C TC+ P N C V +
Sbjct: 5 FPIALLSVVLVVDSQYHQTTTQVSCGINEQYSPCTQMCPPTCESP---NPQCRVDCTRPS 61
Query: 222 CHCNDGLVFNADRKCVPISDC 284
C C G V++ R+C+P + C
Sbjct: 62 CTCLPGHVYSNSRQCIPANSC 82
>Z98877-16|CAH60800.1| 975|Caenorhabditis elegans Hypothetical
protein Y69H2.10b protein.
Length = 975
Score = 33.9 bits (74), Expect = 0.033
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Frame = +3
Query: 123 CPENAHWTD--DPCVRTCDDPYLTNTACVGALIQTCHCNDGLVFNADRKCVPISDC 284
CP+N TD +PC L T C Q C C G + ++D +C DC
Sbjct: 740 CPKNQTMTDCLNPCSEDKCPGILKKTECTNRCGQGCACAYGYLRSSDGECYKPKDC 795
>U50311-11|AAN84861.1| 86|Caenorhabditis elegans Inhibitor of
serine protease likeprotein protein 2, isoform b
protein.
Length = 86
Score = 33.1 bits (72), Expect = 0.057
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 213 IQTCHCNDGLVFNADRKCVPISDC 284
+ TC C DG V N+ KCV +S+C
Sbjct: 1 MNTCDCKDGFVRNSLGKCVEVSEC 24
>U50311-9|AAA92313.1| 137|Caenorhabditis elegans Hypothetical
protein C25E10.8 protein.
Length = 137
Score = 32.7 bits (71), Expect = 0.076
Identities = 23/75 (30%), Positives = 29/75 (38%), Gaps = 4/75 (5%)
Frame = +3
Query: 72 FLIVAVMALEASTTEYGCPENAHWT--DDPCVRTCDDPYLTNTACVGA--LIQTCHCNDG 239
F+I+A A+ C N D C C T C+ A + C C G
Sbjct: 4 FVIIACFIAAATAANKTCGANEEMVACHDHCETQCG---YTPKVCLSAQCIENACDCKKG 60
Query: 240 LVFNADRKCVPISDC 284
V N+ KCV IS C
Sbjct: 61 FVRNSLGKCVDISTC 75
>Z98877-6|CAD56617.1| 432|Caenorhabditis elegans Hypothetical
protein Y69H2.3d protein.
Length = 432
Score = 30.7 bits (66), Expect = 0.31
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Frame = +3
Query: 111 TEYGCPEN--AHWTDDPCV-RTCDDPYLTNTACVGALIQTCHCNDGLVFNADRKCVPISD 281
T CP N ++ +PC + C C+ A C C DG V N CV ++
Sbjct: 95 TNLTCPVNEVSNECHNPCTEKKCPQKNAPQVNCLMACQVGCSCMDGFVRNNQGVCVKEAE 154
Query: 282 C 284
C
Sbjct: 155 C 155
Score = 25.8 bits (54), Expect = 8.7
Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 6/51 (11%)
Frame = +3
Query: 150 DPCVRTCDD------PYLTNTACVGALIQTCHCNDGLVFNADRKCVPISDC 284
+PC C D P C G C C +G + KCV +DC
Sbjct: 377 EPCKTVCSDTKCNEEPRFCPQVCTGG---GCVCQEGFFRDNSGKCVTQNDC 424
>Z98877-5|CAD56616.1| 731|Caenorhabditis elegans Hypothetical
protein Y69H2.3c protein.
Length = 731
Score = 30.7 bits (66), Expect = 0.31
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Frame = +3
Query: 111 TEYGCPEN--AHWTDDPCV-RTCDDPYLTNTACVGALIQTCHCNDGLVFNADRKCVPISD 281
T CP N ++ +PC + C C+ A C C DG V N CV ++
Sbjct: 95 TNLTCPVNEVSNECHNPCTEKKCPQKNAPQVNCLMACQVGCSCMDGFVRNNQGVCVKEAE 154
Query: 282 C 284
C
Sbjct: 155 C 155
Score = 29.9 bits (64), Expect = 0.54
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Frame = +3
Query: 81 VAVMALEASTTEYG--CPENAHWTDDPCVRTCDD---PYLTNTA-CVGALIQTCHCNDGL 242
V+++ L ++T G C +N +D C+ TC + P ++ + C Q C C G
Sbjct: 477 VSIVHLNSTTPAPGSTCAKNQTMSD--CLNTCSEDKCPGMSKSMMCTKHCGQGCACASGY 534
Query: 243 VFNADRKCVPISDC 284
+ ++D +C DC
Sbjct: 535 LRSSDGECYKPKDC 548
Score = 28.7 bits (61), Expect = 1.2
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Frame = +3
Query: 108 TTEYGCPENAHWTDDPCVRT---CDDPYLTNTACVGALIQTCHCNDGLVFNADRKCVPIS 278
TTE CP+N W+ C+ CD ++ A C C DG N + CV
Sbjct: 674 TTE--CPDNEEWSK--CLSNDNQCDLASISMIANKDQCFSGCVCADGFARNNNGTCVASD 729
Query: 279 DC 284
C
Sbjct: 730 KC 731
>Z98877-4|CAB54473.2| 796|Caenorhabditis elegans Hypothetical
protein Y69H2.3b protein.
Length = 796
Score = 30.7 bits (66), Expect = 0.31
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Frame = +3
Query: 111 TEYGCPEN--AHWTDDPCV-RTCDDPYLTNTACVGALIQTCHCNDGLVFNADRKCVPISD 281
T CP N ++ +PC + C C+ A C C DG V N CV ++
Sbjct: 95 TNLTCPVNEVSNECHNPCTEKKCPQKNAPQVNCLMACQVGCSCMDGFVRNNQGVCVKEAE 154
Query: 282 C 284
C
Sbjct: 155 C 155
Score = 29.9 bits (64), Expect = 0.54
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Frame = +3
Query: 81 VAVMALEASTTEYG--CPENAHWTDDPCVRTCDD---PYLTNTA-CVGALIQTCHCNDGL 242
V+++ L ++T G C +N +D C+ TC + P ++ + C Q C C G
Sbjct: 542 VSIVHLNSTTPAPGSTCAKNQTMSD--CLNTCSEDKCPGMSKSMMCTKHCGQGCACASGY 599
Query: 243 VFNADRKCVPISDC 284
+ ++D +C DC
Sbjct: 600 LRSSDGECYKPKDC 613
Score = 28.7 bits (61), Expect = 1.2
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Frame = +3
Query: 108 TTEYGCPENAHWTDDPCVRT---CDDPYLTNTACVGALIQTCHCNDGLVFNADRKCVPIS 278
TTE CP+N W+ C+ CD ++ A C C DG N + CV
Sbjct: 739 TTE--CPDNEEWSK--CLSNDNQCDLASISMIANKDQCFSGCVCADGFARNNNGTCVASD 794
Query: 279 DC 284
C
Sbjct: 795 KC 796
Score = 28.3 bits (60), Expect = 1.6
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 198 CVGALIQTCHCNDGLVFNADRKCVPISDC 284
C+ + C C GLV N +CV +++C
Sbjct: 256 CMMRCEKACSCKKGLVRNRQGQCVKLAEC 284
>Z98877-3|CAB54472.2| 537|Caenorhabditis elegans Hypothetical
protein Y69H2.3a protein.
Length = 537
Score = 30.7 bits (66), Expect = 0.31
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Frame = +3
Query: 111 TEYGCPEN--AHWTDDPCV-RTCDDPYLTNTACVGALIQTCHCNDGLVFNADRKCVPISD 281
T CP N ++ +PC + C C+ A C C DG V N CV ++
Sbjct: 95 TNLTCPVNEVSNECHNPCTEKKCPQKNAPQVNCLMACQVGCSCMDGFVRNNQGVCVKEAE 154
Query: 282 C 284
C
Sbjct: 155 C 155
Score = 25.8 bits (54), Expect = 8.7
Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 6/51 (11%)
Frame = +3
Query: 150 DPCVRTCDD------PYLTNTACVGALIQTCHCNDGLVFNADRKCVPISDC 284
+PC C D P C G C C +G + KCV +DC
Sbjct: 482 EPCKTVCSDTKCNEEPRFCPQVCTGG---GCVCQEGFFRDNSGKCVTQNDC 529
>Z66561-8|CAI79121.1| 137|Caenorhabditis elegans Hypothetical
protein F08G12.11 protein.
Length = 137
Score = 29.9 bits (64), Expect = 0.54
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +3
Query: 129 ENAHWTDDPCVRTCDDPYLTNTACVGALIQTCHCNDGLVFNADRKC 266
EN ++ C T D+P + +C G L++ C C N + C
Sbjct: 19 ENRCVQEENCTLTVDNPGINTKSCEGYLMEECACVQRRSVNFEYDC 64
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical
protein F29D11.1 protein.
Length = 4753
Score = 29.5 bits (63), Expect = 0.71
Identities = 19/73 (26%), Positives = 27/73 (36%)
Frame = +3
Query: 66 IVFLIVAVMALEASTTEYGCPENAHWTDDPCVRTCDDPYLTNTACVGALIQTCHCNDGLV 245
++F +AV +ST + + P VR+ NTA CNDG
Sbjct: 6 LIFTALAVTTANSSTRQQSTFHSIQVDSPPSVRSRIISASVNTASSVCNENDFRCNDGKC 65
Query: 246 FNADRKCVPISDC 284
+ KC DC
Sbjct: 66 IRTEWKCDGSGDC 78
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL
receptor-related protein protein.
Length = 4753
Score = 29.5 bits (63), Expect = 0.71
Identities = 19/73 (26%), Positives = 27/73 (36%)
Frame = +3
Query: 66 IVFLIVAVMALEASTTEYGCPENAHWTDDPCVRTCDDPYLTNTACVGALIQTCHCNDGLV 245
++F +AV +ST + + P VR+ NTA CNDG
Sbjct: 6 LIFTALAVTTANSSTRQQSTFHSIQVDSPPSVRSRIISASVNTASSVCNENDFRCNDGKC 65
Query: 246 FNADRKCVPISDC 284
+ KC DC
Sbjct: 66 IRTEWKCDGSGDC 78
>AC024817-39|AAP68916.1| 128|Caenorhabditis elegans Hypothetical
protein Y54G2A.36 protein.
Length = 128
Score = 29.5 bits (63), Expect = 0.71
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Frame = +3
Query: 198 CVGALIQTCHCN---DGLVFNADRKCVPISDC 284
C+GAL+ TC+CN DG D C + C
Sbjct: 40 CIGALVGTCNCNSCVDGWPCQEDSACGGFNRC 71
>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical
protein ZK783.1 protein.
Length = 2585
Score = 29.1 bits (62), Expect = 0.94
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Frame = +3
Query: 117 YGCPENAHWTDDPCVRT----CDDPYLTNTACVGALIQTCHCNDGLVFNADRKCVPISDC 284
Y C +N D C++ C N C A TC C DG + +KCV I++C
Sbjct: 366 YVCCKNGQ-DDATCIKDQGAFCSGGCGDNAICSNA---TCACIDGFRGDPHKKCVDINEC 421
>AF016668-4|AAO12440.1| 222|Caenorhabditis elegans Hypothetical
protein F36H9.4 protein.
Length = 222
Score = 28.3 bits (60), Expect = 1.6
Identities = 15/69 (21%), Positives = 31/69 (44%)
Frame = +3
Query: 69 VFLIVAVMALEASTTEYGCPENAHWTDDPCVRTCDDPYLTNTACVGALIQTCHCNDGLVF 248
+F++ A ++ A+ + G E+ C C + ++ + ++ C C DG
Sbjct: 10 IFILFA--SVLAAPKKCGPNEDFKECGTACEANCAEGHVM-FCTMQCIVNVCQCKDGFFR 66
Query: 249 NADRKCVPI 275
N D+KC +
Sbjct: 67 NKDKKCAHV 75
>Z99288-10|CAB16552.2| 338|Caenorhabditis elegans Hypothetical
protein ZK262.11 protein.
Length = 338
Score = 27.5 bits (58), Expect = 2.9
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +3
Query: 30 KNITKMAAKQYFIVFLIVAVMALEASTTEYGCP 128
K +MAA +++++ + V+VMAL+ S T G P
Sbjct: 43 KTPLQMAAVKWYLLQMHVSVMALDYSVTVVGIP 75
>Z81483-7|CAB03964.2| 338|Caenorhabditis elegans Hypothetical
protein C43D7.6 protein.
Length = 338
Score = 27.5 bits (58), Expect = 2.9
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +3
Query: 30 KNITKMAAKQYFIVFLIVAVMALEASTTEYGCP 128
K +MAA +++++ + V+VMAL+ S T G P
Sbjct: 43 KTPLQMAAVKWYLLQMHVSVMALDYSVTVVGIP 75
>Z82280-5|CAB05266.1| 294|Caenorhabditis elegans Hypothetical
protein R05A10.5 protein.
Length = 294
Score = 26.6 bits (56), Expect = 5.0
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = +3
Query: 159 VRTCDDPYLTNTACVGALIQTCHCN-DGLVFNADRKCVP 272
+RTC L N AC GA + CN + A + C P
Sbjct: 58 IRTCLSSELGNCACSGAPSRYIPCNLSACKYPAQKTCCP 96
>Z81458-4|CAB03824.1| 623|Caenorhabditis elegans Hypothetical
protein C03E10.5 protein.
Length = 623
Score = 25.8 bits (54), Expect = 8.7
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +3
Query: 132 NAHWTDDPCVRTCDDPYLTNTACVGALIQTCHCNDGLVFNAD 257
N H+ DDP V T D AC G +I N+ V++ D
Sbjct: 85 NQHFNDDPGVETSPDHV---RACTGIIIVKGATNNKNVYSLD 123
>Z71266-3|CAA95840.1| 292|Caenorhabditis elegans Hypothetical
protein R06C7.4 protein.
Length = 292
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Frame = +3
Query: 198 CVGALIQTCHCND---GLVFNADRKCVPISDC*NVIT 299
C+GAL TC+CN G D C + N IT
Sbjct: 205 CIGALAGTCNCNSCVFGWPCQEDSACGGFNGACNSIT 241
>Z19157-2|CAA79568.1| 826|Caenorhabditis elegans Hypothetical
protein ZC84.3 protein.
Length = 826
Score = 25.8 bits (54), Expect = 8.7
Identities = 8/24 (33%), Positives = 18/24 (75%)
Frame = -3
Query: 115 SVVLASRAITATIRNTIKYCLAAI 44
+++ A ++ ++T+R T+ YCL A+
Sbjct: 764 TIIKAYQSTSSTVRKTVVYCLVAM 787
>U58730-1|AAC48058.1| 514|Caenorhabditis elegans Inward rectifying
k (potassium)channel family protein 2 protein.
Length = 514
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 44 DGRQTILYRVPDCRRDGSRGQHYRIWMP*KC 136
DG+ +L+RV D R+ H R+ M +C
Sbjct: 243 DGKLCLLFRVGDMRKSSLAEAHVRLQMIKRC 273
>U28737-5|AAA68274.1| 684|Caenorhabditis elegans Na/h exchanger
protein 4, isoform b protein.
Length = 684
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -3
Query: 262 FLSALKT--KPSLQWQV*MRAPTQAVLVRYG 176
FL L T KP+L W V + P VL+ YG
Sbjct: 41 FLIILVTLAKPTLHWPVLRKLPESVVLMLYG 71
>U28737-4|AAM48522.1| 749|Caenorhabditis elegans Na/h exchanger
protein 4, isoform a protein.
Length = 749
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -3
Query: 262 FLSALKT--KPSLQWQV*MRAPTQAVLVRYG 176
FL L T KP+L W V + P VL+ YG
Sbjct: 106 FLIILVTLAKPTLHWPVLRKLPESVVLMLYG 136
>DQ340625-1|ABC65813.1| 292|Caenorhabditis elegans chondroitin
proteoglycan-3 protein.
Length = 292
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Frame = +3
Query: 198 CVGALIQTCHCND---GLVFNADRKCVPISDC*NVIT 299
C+GAL TC+CN G D C + N IT
Sbjct: 205 CIGALAGTCNCNSCVFGWPCQEDSACGGFNGACNSIT 241
>AL132858-16|CAB60486.2| 538|Caenorhabditis elegans Hypothetical
protein Y113G7A.5 protein.
Length = 538
Score = 25.8 bits (54), Expect = 8.7
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +3
Query: 147 DDPCVRTCDDPYLTNTACVG--ALIQTCHCNDGLVFNADRKCVPISD 281
DD C++ CD L ++ C Q+C C DG ++ C +SD
Sbjct: 18 DDECIK-CD---LRSSYCKTWENSTQSCECRDGFARISNGSCAMVSD 60
>AL117207-25|CAB61042.2| 538|Caenorhabditis elegans Hypothetical
protein Y113G7A.5 protein.
Length = 538
Score = 25.8 bits (54), Expect = 8.7
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +3
Query: 147 DDPCVRTCDDPYLTNTACVG--ALIQTCHCNDGLVFNADRKCVPISD 281
DD C++ CD L ++ C Q+C C DG ++ C +SD
Sbjct: 18 DDECIK-CD---LRSSYCKTWENSTQSCECRDGFARISNGSCAMVSD 60
>AF497827-1|AAM18105.1| 684|Caenorhabditis elegans putative Na-H
exchanger isoform 4b protein.
Length = 684
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -3
Query: 262 FLSALKT--KPSLQWQV*MRAPTQAVLVRYG 176
FL L T KP+L W V + P VL+ YG
Sbjct: 41 FLIILVTLAKPTLHWPVLRKLPESVVLMLYG 71
>AF497826-1|AAM18104.1| 749|Caenorhabditis elegans putative Na-H
exchanger isoform 4a protein.
Length = 749
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -3
Query: 262 FLSALKT--KPSLQWQV*MRAPTQAVLVRYG 176
FL L T KP+L W V + P VL+ YG
Sbjct: 106 FLIILVTLAKPTLHWPVLRKLPESVVLMLYG 136
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,049,408
Number of Sequences: 27780
Number of extensions: 124024
Number of successful extensions: 413
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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