Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11j17f
         (351 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g51510.1 68414.m05797 RNA-binding protein, putative similar t...    27   2.7  
At3g08820.1 68416.m01024 pentatricopeptide (PPR) repeat-containi...    27   3.5  
At5g50890.1 68418.m06308 hypothetical protein                          27   4.6  
At4g01995.1 68417.m00267 expressed protein                             26   6.1  
At2g47620.1 68415.m05941 SWIRM domain-containing protein / DNA-b...    26   6.1  
At1g66730.1 68414.m07585 ATP dependent DNA ligase family protein...    26   6.1  
At1g17750.1 68414.m02197 leucine-rich repeat transmembrane prote...    26   6.1  

>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
           RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
           from [Homo sapiens], RNA-binding protein Y14 [Xenopus
           laevis] GI:11034807; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 202

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 199 QAVLVRYGSSQVLTQGSSVQWAFSGHP 119
           Q+ +     +++LTQ  SV WAFS  P
Sbjct: 150 QSAISAMNGAELLTQNVSVDWAFSSGP 176


>At3g08820.1 68416.m01024 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 685

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
 Frame = +3

Query: 78  IVAVMALEASTTEYGCPEN----AHWTDDPCVRTCDDPYLTNTACVGALIQTC 224
           I  V AL+ +   YGC  +    A   DD     CD P   N    GAL+  C
Sbjct: 440 ISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGC 492


>At5g50890.1 68418.m06308 hypothetical protein
          Length = 408

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -3

Query: 262 FLSALKTKPSLQWQV*MRAPTQAVLVRYGSSQVLTQGSSVQWAFS 128
           FL+    K S+++ V + A  Q+V  RYGSS V   G S+   F+
Sbjct: 176 FLAWESLKGSVRFNVALEA-LQSVATRYGSSNVCVVGHSLGAGFA 219


>At4g01995.1 68417.m00267 expressed protein
          Length = 258

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/33 (36%), Positives = 13/33 (39%)
 Frame = +3

Query: 126 PENAHWTDDPCVRTCDDPYLTNTACVGALIQTC 224
           P    W     V  C   YL  + CVG  I TC
Sbjct: 162 PNGESWDSGVFVEKCQ--YLEESKCVGVCINTC 192


>At2g47620.1 68415.m05941 SWIRM domain-containing protein /
           DNA-binding family protein contains similarity to
           SWI/SNF complex 170 KDa subunit [Homo sapiens]
           gi|1549241|gb|AAC50694; contains Pfam domains PF04433:
           SWIRM domain, PF00249: Myb-like DNA-binding domain
          Length = 512

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +3

Query: 15  ESCSLKNITKMAAKQYFIVFLIVAVMALEASTTEYGCPENAHWTDD 152
           +S  +K +  MA+K    V    A  AL A   E  CP+    TDD
Sbjct: 336 DSSLMKQVAAMASKVGPSVATAAAKAALAALCDEASCPKEIFDTDD 381


>At1g66730.1 68414.m07585 ATP dependent DNA ligase family protein
           contains Pfam profile: PF01068 ATP dependent DNA ligase
           domain
          Length = 1417

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
 Frame = +3

Query: 162 RTCD----DPYLTN-TACVGALIQTCHCNDGLVFNADRKCV 269
           R CD    DP+L     C G  + T +CN   VF +  + V
Sbjct: 175 RFCDEMRFDPFLNGFVGCDGVFLDTTYCNPKFVFPSQEESV 215


>At1g17750.1 68414.m02197 leucine-rich repeat transmembrane protein
           kinase, putative similar to receptor-like protein kinase
           INRPK1 GI:1684913 from [Ipomoea nil]
          Length = 1088

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -3

Query: 133 FSGHPYSVVLASRAITATIRNTIKYCLAAIFVIFFRLQL 17
           FSG+P   + AS +++A IR   K C   + +  +++ L
Sbjct: 702 FSGNPDLCIQASYSVSAIIRKEFKSCKGQVKLSTWKIAL 740


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,521,101
Number of Sequences: 28952
Number of extensions: 112122
Number of successful extensions: 307
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 439384704
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)