Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11j16f
         (568 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106580-3|AAC78205.1|  881|Caenorhabditis elegans Temporarily a...    30   1.0  
Z81460-2|CAB03831.1|  439|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z48334-4|CAB61010.2|  426|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AF143297-1|AAD33902.1|  426|Caenorhabditis elegans tubby homolog...    29   2.3  
AF099918-1|AAK29840.2|  820|Caenorhabditis elegans Hypothetical ...    29   3.1  
U21308-15|AAB93316.2|  412|Caenorhabditis elegans Hypothetical p...    28   4.1  
AF068721-9|AAC19265.1|  570|Caenorhabditis elegans Hypothetical ...    28   4.1  
Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical pr...    28   5.4  
L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome cond...    28   5.4  
Z81461-6|CAB03837.1|  272|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z81034-4|CAB02729.1|  541|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z49911-2|CAA90130.1|  681|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AC006769-9|AAF60585.2|  779|Caenorhabditis elegans Hypothetical ...    27   9.4  
AC006645-2|AAF39844.2|  796|Caenorhabditis elegans Hypothetical ...    27   9.4  

>AF106580-3|AAC78205.1|  881|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 268 protein.
          Length = 881

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 26/112 (23%), Positives = 44/112 (39%)
 Frame = -3

Query: 533  TSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEPTDAET 354
            T P V   P+S   +  +       SA    + +    K     +K  +S SA P+   T
Sbjct: 768  TVPKVTVVPVSRVPVAPSTPLSRRMSAPVVRKPTMTAEKKREITMKPSVSTSARPSLINT 827

Query: 353  LGTARTKLSRVPT*LTRRKCRELKSSALTSVTRPEKLMMSDAPGGLQEPA*P 198
                  + S +P      K + L+ +  T + +   +  S  P GL++PA P
Sbjct: 828  SSHPMVR-SPLPKMSVLEKPKPLRITRPTVIPQSPTVTSSARPSGLRQPAKP 878


>Z81460-2|CAB03831.1|  439|Caenorhabditis elegans Hypothetical
           protein C04A11.2 protein.
          Length = 439

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 19/72 (26%), Positives = 30/72 (41%)
 Frame = -3

Query: 533 TSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEPTDAET 354
           ++P+V      LT   SAR +   AS       +P   +++R       S +  P    T
Sbjct: 153 STPVVRNILQQLTTPRSARTSTRAASGNRTPTGTPNMTRNVRPVTNRTSSSNVSPAAQVT 212

Query: 353 LGTARTKLSRVP 318
            GT+    SR+P
Sbjct: 213 PGTSSNHRSRLP 224


>Z48334-4|CAB61010.2|  426|Caenorhabditis elegans Hypothetical
           protein F10B5.4 protein.
          Length = 426

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +1

Query: 214 WSPPGASDIINFSGRVTDVKADDFSSLHLRRVSYV 318
           W+    S ++NF GRVT     +F  +H     Y+
Sbjct: 352 WNDETQSYVLNFHGRVTQASVKNFQIIHQSSPEYI 386


>AF143297-1|AAD33902.1|  426|Caenorhabditis elegans tubby homolog
           protein.
          Length = 426

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +1

Query: 214 WSPPGASDIINFSGRVTDVKADDFSSLHLRRVSYV 318
           W+    S ++NF GRVT     +F  +H     Y+
Sbjct: 352 WNDETQSYVLNFHGRVTQASVKNFQIIHQSSPEYI 386


>AF099918-1|AAK29840.2|  820|Caenorhabditis elegans Hypothetical
           protein H05C05.1a protein.
          Length = 820

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 19/88 (21%), Positives = 38/88 (43%)
 Frame = -3

Query: 482 ARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEPTDAETLGTARTKLSRVPT*LTR 303
           A + E  +S +   ++   EAK  +   K  + PSA  +D  +  T  T +++ P   T+
Sbjct: 689 AEKPEGSSSGSATEKSKEIEAKSKKDDTKKPLEPSAASSDPSSSSTTTTTITKEPP--TQ 746

Query: 302 RKCRELKSSALTSVTRPEKLMMSDAPGG 219
                  ++A  +  +P +   + A  G
Sbjct: 747 SASASGAAAAAAASAQPSESSSATAASG 774


>U21308-15|AAB93316.2|  412|Caenorhabditis elegans Hypothetical
           protein ZK1290.10 protein.
          Length = 412

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
 Frame = -3

Query: 545 RLDLTSPIVIAAPMSLTMM-LSARETEAVASATTFSRASP-----PEAKDLRTRLKMRIS 384
           RLD T P+  A P+ L ++ ++ +E +  AS T+   A P     P A       +  + 
Sbjct: 59  RLDNTIPVPPALPIGLPIIQITTKEPQPPASLTSLPAAPPSAQVAPPAIRPPEAKRTSLE 118

Query: 383 PSAEPTDAETLGTARTKLSRVPT 315
           P    T   ++ +  T L R PT
Sbjct: 119 PPQPSTPQASISSTTTVLIRNPT 141


>AF068721-9|AAC19265.1|  570|Caenorhabditis elegans Hypothetical
           protein ZK1055.7 protein.
          Length = 570

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -3

Query: 428 PEAKDLRTRLKMRISPSAEPTDAETLGT 345
           P + D + R+K+ +SP+A P DAE  GT
Sbjct: 491 PRSTDEKIRVKL-VSPAATPYDAEKAGT 517


>Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical protein
            R13G10.1 protein.
          Length = 1469

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 55   LALACVSAV-PHRDVDFEPNSQRILDIVISNLFNEIGELLRAADPLRRD 198
            L   C+S + PHR+   E  ++ + D V  +  N+I +L +  D  RR+
Sbjct: 1090 LPYECISMIEPHREAYEEHEARMLEDDVFEDTANKICKLEKDVDKFRRE 1138


>L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome
            condensation protein protein.
          Length = 1469

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 55   LALACVSAV-PHRDVDFEPNSQRILDIVISNLFNEIGELLRAADPLRRD 198
            L   C+S + PHR+   E  ++ + D V  +  N+I +L +  D  RR+
Sbjct: 1090 LPYECISMIEPHREAYEEHEARMLEDDVFEDTANKICKLEKDVDKFRRE 1138


>Z81461-6|CAB03837.1|  272|Caenorhabditis elegans Hypothetical
           protein C04F12.8 protein.
          Length = 272

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
 Frame = -3

Query: 503 SLTMMLSARETEAVASATTFSRASPPEAKDLRTR-LKMRISPSAEPTDAETLGTARTKLS 327
           SL    S+   +   SA+T+ R S   A  L T  L+   SPS+ P  +  L T+ +  S
Sbjct: 187 SLPSAQSSASKQRAFSASTY-RPSVSSASSLATSSLRRAYSPSSLPASSLALTTSYSLFS 245

Query: 326 RVPT*LTRRKCRELKSSA 273
             PT   R+    + S++
Sbjct: 246 PAPTRKPRQSLFSMYSTS 263


>Z81034-4|CAB02729.1|  541|Caenorhabditis elegans Hypothetical
           protein C15C6.3 protein.
          Length = 541

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 18/78 (23%), Positives = 28/78 (35%)
 Frame = -3

Query: 533 TSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEPTDAET 354
           T P   A P  L +     + + +     +   +PP     + R K   +PSA   DA  
Sbjct: 82  TDPDKRAIPSLLDIRTHKPQMKDLGPQVIYPNRAPPNPSSSQNRFKRDSAPSAPARDAPM 141

Query: 353 LGTARTKLSRVPT*LTRR 300
                    + P  +TRR
Sbjct: 142 FRGRTISQRQAPPQITRR 159


>Z49911-2|CAA90130.1|  681|Caenorhabditis elegans Hypothetical
           protein M28.2 protein.
          Length = 681

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
 Frame = +1

Query: 259 VTDVKADDFSSLHLRRVSYVGTRLNLVLAV-PRVSASVGSAEGEIRIFSRVLRSFASGGL 435
           V  VK     S+H + VSYV T + + + V   + A +G     + I   VL      GL
Sbjct: 358 VKAVKKISIPSIHQKVVSYVSTGMVIGIRVGVTILACLGLICCILAIVVVVLSLMKQDGL 417

Query: 436 ALE-NVVAEATASVSLADNIIVSDIGAAI-TIGDVKSNLQINLFG 564
           A++ +V    +  VS+   II+  I   +  +G V S++ + +FG
Sbjct: 418 AMKLSVAVIISFFVSIVLCIILFKIAMTVFAMGLVVSSVCVPVFG 462


>AC006769-9|AAF60585.2|  779|Caenorhabditis elegans Hypothetical
           protein Y45G12C.11 protein.
          Length = 779

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 202 YAGSWSPPGASDIINFSGRVTDV 270
           + GSW P   SD INF+  +T +
Sbjct: 511 FCGSWYPDEFSDDINFTSTITPI 533


>AC006645-2|AAF39844.2|  796|Caenorhabditis elegans Hypothetical
           protein F56A4.6 protein.
          Length = 796

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 202 YAGSWSPPGASDIINFSGRVTDV 270
           + GSW P   SD INF+  +T +
Sbjct: 528 FCGSWYPDEFSDDINFTSTITPI 550


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,278,726
Number of Sequences: 27780
Number of extensions: 214011
Number of successful extensions: 657
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)