Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11j15r
(626 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0156 - 11963580-11963914,11964422-11964517,11964618-119646... 69 4e-12
09_01_0014 + 357398-357583,360213-360323,360520-360676,361067-36... 59 3e-09
06_03_0852 - 25371461-25371783,25372080-25372159,25372472-253725... 46 2e-05
08_02_1358 - 26372559-26372887,26373183-26373262,26373287-263734... 40 0.001
01_06_1202 + 35396165-35396260,35396398-35396549,35396694-353969... 29 4.0
08_01_0397 - 3509186-3510291,3510322-3512335 28 5.3
08_01_0353 - 3107628-3107774,3108177-3108213,3108248-3109164,310... 28 5.3
>04_03_0156 -
11963580-11963914,11964422-11964517,11964618-11964697,
11965250-11965290,11965402-11965548,11965922-11966035,
11968842-11968961,11969491-11969631,11969892-11970014,
11970357-11970566
Length = 468
Score = 68.5 bits (160), Expect = 4e-12
Identities = 46/141 (32%), Positives = 69/141 (48%), Gaps = 8/141 (5%)
Frame = -2
Query: 448 CTNMLFAFAGRSEDMHNATMLPVKLGHTPAGIAVRQIAHYGQLINNNFFRRYDHGRL-KN 272
C N++ AF G + + N+++ V L H P A + + H Q+I +YD+G N
Sbjct: 317 CYNLMSAFTGDNCCLDNSSV-QVFLAHEPQATATKNMIHLAQMIRGGTIAKYDYGNAGDN 375
Query: 271 WRVYRSFTPPRYDLSLITA--PVFLHYVDDDIFADVRDVRKLQIELG----RPVGMFRVP 110
Y TPP YD++ I P+FL Y D +DV+DV +L LG R V
Sbjct: 376 REHYGQATPPAYDVTAIPGDFPLFLSYGGRDSLSDVQDVSRLLRALGQSHSRDGDKLTVQ 435
Query: 109 H-ATFSHLDFMWGSGAKELLY 50
+ A ++H DF+ A E +Y
Sbjct: 436 YLADYAHADFVMARNAGERVY 456
>09_01_0014 +
357398-357583,360213-360323,360520-360676,361067-361233,
362012-362122,362206-362349,362436-362476,364134-364174,
364175-364261,365402-365724
Length = 455
Score = 58.8 bits (136), Expect = 3e-09
Identities = 35/104 (33%), Positives = 54/104 (51%), Gaps = 2/104 (1%)
Frame = -2
Query: 322 LINNNFFRRYDHGRLKNWRVYRSFTPPRYDLSLI--TAPVFLHYVDDDIFADVRDVRKLQ 149
+I F +YD+G L N R Y PP +DLS I + P+++ Y D ADV DV++
Sbjct: 349 VIRKGTFAKYDYGLLGNLRRYGHLRPPAFDLSSIPESLPIWMGYGGLDALADVTDVQRTI 408
Query: 148 IELGRPVGMFRVPHATFSHLDFMWGSGAKELLYDRTIQIMRSLG 17
ELG + + + H+DF+ AK+ +Y I+ +R G
Sbjct: 409 RELGSTPELLYI--GDYGHIDFVMSVKAKDDVYVDLIRFLRENG 450
>06_03_0852 -
25371461-25371783,25372080-25372159,25372472-25372554,
25372597-25372740,25372836-25372946,25373238-25373354,
25373436-25373562,25374160-25374296
Length = 373
Score = 46.0 bits (104), Expect = 2e-05
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Frame = -2
Query: 322 LINNNFFRRYDHGRLK-NWRVYRSFTPPRYDLSLIT--APVFLHYVDDDIFADVRDVRKL 152
++ N R+D+G K N + Y PP Y+LS I P+FL + +D DV D R L
Sbjct: 267 VVRNGGVSRFDYGNAKDNMKHYNQPRPPPYNLSSIPNHVPIFLTHGGEDYLGDVPDTRHL 326
Query: 151 QIELGRP-----VGMFRVPHATFSHLDFMWGSGAKELLYDRTIQIMR 26
L + + + VP ++H DF+ A EL+Y + +
Sbjct: 327 LRTLVKKHNSDSIEVIYVPD--YAHADFIMAYNAPELIYGPMVDFFK 371
>08_02_1358 -
26372559-26372887,26373183-26373262,26373287-26373420,
26373546-26373689,26373809-26373919,26374165-26374305,
26376839-26376964,26377072-26377263
Length = 418
Score = 40.3 bits (90), Expect = 0.001
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Frame = -2
Query: 262 YRSFTPPRYDLSLITA--PVFLHYVDDDIFADVRDVRKLQIEL---GRPVGMFRVPHAT- 101
Y PP YD++ I A P+FL Y D +D DV L +L G V +
Sbjct: 331 YGQADPPAYDMAAIPAWFPIFLSYGGRDSLSDPADVALLLDDLRRGGHAGDRLTVQYLPQ 390
Query: 100 FSHLDFMWGSGAKELLYDRTIQIMR 26
+H DF+ G AK+L+Y+ I R
Sbjct: 391 LAHADFVIGVCAKDLVYNDVISFFR 415
>01_06_1202 +
35396165-35396260,35396398-35396549,35396694-35396938,
35397044-35398350
Length = 599
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -2
Query: 466 VFFQAMCTNMLFAFAGRSEDMH-NATMLPVKLGHT 365
VF+Q +C A R ++MH T +PVK G T
Sbjct: 217 VFYQPVCVRQCVANLQRHDNMHAETTAVPVKPGET 251
>08_01_0397 - 3509186-3510291,3510322-3512335
Length = 1039
Score = 28.3 bits (60), Expect = 5.3
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 415 CVQQKRITYLCTSPGKIRHQRKISF 489
C + I LCTS GKI + R+++F
Sbjct: 553 CTPGRMIDILCTSSGKITNLRRVTF 577
>08_01_0353 -
3107628-3107774,3108177-3108213,3108248-3109164,
3109210-3110952
Length = 947
Score = 28.3 bits (60), Expect = 5.3
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 415 CVQQKRITYLCTSPGKIRHQRKISF 489
C + I LCTS GKI + R+++F
Sbjct: 414 CTPGRMIDILCTSSGKITNLRRVTF 438
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,959,313
Number of Sequences: 37544
Number of extensions: 357096
Number of successful extensions: 794
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -