Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11j15f
(615 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos... 45 8e-06
SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo... 40 2e-04
SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces po... 30 0.31
SPAC4H3.07c |||protein phosphatase Fmp31 |Schizosaccharomyces po... 27 1.6
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 27 1.6
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 27 2.2
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 27 2.8
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 26 5.0
SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||... 25 6.6
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 25 6.6
>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 467
Score = 45.2 bits (102), Expect = 8e-06
Identities = 35/172 (20%), Positives = 74/172 (43%), Gaps = 4/172 (2%)
Frame = +2
Query: 104 LFGRSDFFTNVGM--RFCADGVF--FQAMCTNMLFAFAGRSEDMHNATMLPVKLGHTPAG 271
LFGR + G F A F A C + LF ++ ++ + V H +
Sbjct: 276 LFGRKSILPSAGFWQSFLAPKFFDAVLAYCLSQLFNWSCQNISSYQRL---VSFAHLYSY 332
Query: 272 IAVRQIAHYGQLINNNFFRRYDHGRLKNWRVYRSFTPPRYDLSLITAPVFLHYVDDDIFA 451
+V+ + H+ Q++ + FR YD+ +L + + + ++ + I P++L + D
Sbjct: 333 TSVKCLVHWFQIMRSAEFRMYDNDQLGHDYFLKYYKAAKFPTNNIRTPIYLIWGGSDSLV 392
Query: 452 DVRDVRKLQIELGRPVGMFRVPHATFSHLDFMWGSGAKELLYDRTIQIMRSL 607
D++ + P + V ++ HLD +W K+ + ++ +R +
Sbjct: 393 DIQAMLN-----ALPAEVEHVKVDSYEHLDMIWADTVKDYVIPPVLRRLRDI 439
>SPBC16A3.12c |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 443
Score = 40.3 bits (90), Expect = 2e-04
Identities = 42/176 (23%), Positives = 74/176 (42%), Gaps = 7/176 (3%)
Frame = +2
Query: 104 LFGRSDFFTNVGM--RFCADGVFFQAMCTNMLFAFAGRSEDMHNATMLPVKLG--HTPAG 271
LFGR +V C +F + + ++ F + D+ N ++ G H +
Sbjct: 264 LFGRRCLLPSVTFWQNICYPPIFVKIVDVSLKILF---NWDLSNISLNQKLCGYAHLYSF 320
Query: 272 IAVRQIAHYGQLINNNFFRRYDHGR-LKNWRVYRSFTPPRYDLSLITAPVFLHYVDDDIF 448
+V+ + H+ Q+I N F+ YD L R + P + + I P+ + + D
Sbjct: 321 SSVKSVVHWLQIIKNCTFQLYDDDMALLAGYGSRHYQVPLFPTNNIKCPMLILWGGKDTL 380
Query: 449 ADVRDVRKLQIELGRPVGMFRVPHATFSHLDFMWGSGAKELLYDRTIQIMR--SLG 610
++ +R P V A + HLDF+WG KE ++ I ++ SLG
Sbjct: 381 INMEVMRT-----ALPPHAKEVSIAHYEHLDFLWGQDVKEEVFPVVIDALKHHSLG 431
>SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 29.9 bits (64), Expect = 0.31
Identities = 16/56 (28%), Positives = 30/56 (53%)
Frame = -3
Query: 388 SWRCETSVNPPIFQTSVIISSEEIVVDELTVMRYLPDSNACGCMS*FHRQHSRIVH 221
SW+ ++S + + SV +SS + V L+V + +S F ++H+RI+H
Sbjct: 65 SWKKDSSNSGKLDTVSVPMSSSDSDVLPLSVALQYGQGSGAALLSQFLKEHTRIIH 120
>SPAC4H3.07c |||protein phosphatase Fmp31 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 171
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -1
Query: 255 PSFTGNIVALCMSSLRPAKANNIFVHIAWKN 163
P F N+V C S R A++I + +KN
Sbjct: 123 PVFEDNVVVYCRSGRRSTTASDILTKLGYKN 153
>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 811
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 428 YVDDDIFADVRDVRKLQIELGRPVGMFRVPH 520
Y+D F + ++ LG+PVG+FR H
Sbjct: 622 YIDRSDFREEASSDFFRLTLGQPVGLFRASH 652
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 27.1 bits (57), Expect = 2.2
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = -1
Query: 207 PAKANNIFVHIAWKNTPSAQNLIPTFVKKSDLPNSSFIPMRLVSASILLACGAIS 43
P N + +W +T SA L P SD P S +P +++ S L C A++
Sbjct: 281 PFSPINPYYAKSWNHTASAPLLPPGLKNGSDYPYLS-VPPDILNDSYLAMCEAVN 334
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 26.6 bits (56), Expect = 2.8
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 152 ADGVFFQAMCTNMLFAFAGRSEDMHNATMLPVKLGHTPA 268
A+G +++C N+LFA S+ N + VK TPA
Sbjct: 859 AEGEIEESVCDNILFAINNLSQLNFNEKLKDVKDNLTPA 897
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 25.8 bits (54), Expect = 5.0
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 469 KTTDRIGSSSWNVQSTTCN 525
K D IGSS+W+ S CN
Sbjct: 273 KDRDEIGSSTWSWPSQNCN 291
>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 467
Score = 25.4 bits (53), Expect = 6.6
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 92 GINELFGRSDFFTNVGMRFCADGVFFQAMCTNML 193
GI+E F S N+GM FCA +++ N L
Sbjct: 244 GIHEEFVFSPRLDNLGMTFCASQALTKSLENNSL 277
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 25.4 bits (53), Expect = 6.6
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = +1
Query: 181 HKYVIRFCWTQ*RHAQCDYVACETRTYTRRH 273
H + + C T + C Y C+ + YT++H
Sbjct: 69 HLKIHKRCHTNVKPFSCHYDGCDAQFYTQQH 99
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,601,072
Number of Sequences: 5004
Number of extensions: 55358
Number of successful extensions: 146
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -