Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11j14r
         (384 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1ZGL4 Cluster: Putative uncharacterized protein; n=1; ...    31   9.9  
UniRef50_Q7R8D2 Cluster: Splicing factor 3a subunit 3; n=1; Plas...    31   9.9  

>UniRef50_A1ZGL4 Cluster: Putative uncharacterized protein; n=1;
           Microscilla marina ATCC 23134|Rep: Putative
           uncharacterized protein - Microscilla marina ATCC 23134
          Length = 179

 Score = 30.7 bits (66), Expect = 9.9
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = -1

Query: 198 IVPFFY*GIWNNYLILVSLFLDNKTNQISLCI*RRPDFFTVAK*ASKNLY*YYKEERF 25
           I+ +F   I NN L  +   +D+K  + S  I  +   F++     +N+Y YY+E+ F
Sbjct: 16  IILYFKGEITNNLLTSILQLIDDKLERKSEAIKTKRKVFSILLECLQNVYNYYQEKEF 73


>UniRef50_Q7R8D2 Cluster: Splicing factor 3a subunit 3; n=1;
           Plasmodium yoelii yoelii|Rep: Splicing factor 3a subunit
           3 - Plasmodium yoelii yoelii
          Length = 585

 Score = 30.7 bits (66), Expect = 9.9
 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
 Frame = +3

Query: 63  TLILQL*KSPVVFKYIDLFGLFYYLKRD*LISNNCSKYLNRK-RGLFKNMIKYLISYQ*L 239
           T+ L   K   +  Y++ F  FYY+ R       C KY N + +   KN++ YLIS+   
Sbjct: 182 TIFLNSFKEISLITYLNNFTRFYYIPR------YC-KYKNEEYKNYLKNLLNYLISFFSK 234

Query: 240 IIYRLDCFQFNEQRAN 287
           I   ++C +  EQ  N
Sbjct: 235 INILVNCEKTYEQYEN 250


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 334,424,196
Number of Sequences: 1657284
Number of extensions: 6025511
Number of successful extensions: 10531
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 10287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10531
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 15293670012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)