Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11j14r
         (384 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK126249-1|BAC86503.1|  942|Homo sapiens protein ( Homo sapiens ...    29   6.8  
AK123607-1|BAC85660.1|  677|Homo sapiens protein ( Homo sapiens ...    29   6.8  

>AK126249-1|BAC86503.1|  942|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44261 fis, clone TLIVE2001327, moderately
           similar to Human DOCK180 protein mRNA. ).
          Length = 942

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 19/84 (22%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
 Frame = -1

Query: 360 KNCIVF*TKVYIKFKNFL-EYIRLMSWLFVH*IENNLICK**VIDNLSNILS-YF*IVPF 187
           ++ I F  + +I FK+ + + +    W+ ++  +N +  +   I+  + +L+ +F     
Sbjct: 52  QDIIDFLLETFIMFKDLIGKNVYAKDWMVMNMTQNRVFLR--AINQFAEVLTRFFMDQAS 109

Query: 186 FY*GIWNNYLILVSLFLDNKTNQI 115
           F   +WNNY  L   FL +++ Q+
Sbjct: 110 FELQLWNNYFHLAVAFLTHESLQL 133


>AK123607-1|BAC85660.1|  677|Homo sapiens protein ( Homo sapiens
           cDNA FLJ41613 fis, clone CTONG3002412, moderately
           similar to Human DOCK180 protein mRNA. ).
          Length = 677

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 19/84 (22%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
 Frame = -1

Query: 360 KNCIVF*TKVYIKFKNFL-EYIRLMSWLFVH*IENNLICK**VIDNLSNILS-YF*IVPF 187
           ++ I F  + +I FK+ + + +    W+ ++  +N +  +   I+  + +L+ +F     
Sbjct: 426 QDIIDFLMETFIMFKDLIGKNVYAKDWMVMNMTQNRVFLR--AINRFAEVLTRFFMDQAS 483

Query: 186 FY*GIWNNYLILVSLFLDNKTNQI 115
           F   +WNNY  L   FL +++ Q+
Sbjct: 484 FELQLWNNYFHLAVAFLTHESLQL 507


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,549,474
Number of Sequences: 237096
Number of extensions: 779296
Number of successful extensions: 764
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2583773550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)