Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11j14r
         (384 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g44700.1 68416.m04807 expressed protein contains Pfam profile...    28   2.5  
At5g47250.1 68418.m05826 disease resistance protein (CC-NBS-LRR ...    26   7.5  
At5g06940.1 68418.m00784 leucine-rich repeat family protein cont...    26   9.9  

>At3g44700.1 68416.m04807 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function; expression
           supported by MPSS
          Length = 368

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -1

Query: 378 FLILFHKNCIVF*TKVYIKFKNFLEYIRLMSWLFVH*IENNLICK**VIDN 226
           FLILF  NC+ F        K+   Y+  M  L  +  +  L+C+  +I N
Sbjct: 226 FLILFFFNCVAFEDFYAYCTKHITSYVFFMGCLLENEDDARLLCRKGIITN 276


>At5g47250.1 68418.m05826 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 843

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +3

Query: 9   KQTNKQIFPLYNISIDF*TLILQL*KSPVVFKYIDLFGLFYYLKRD*LI 155
           K T K IF +  +S D+    L+  K+   F Y  LF   YY+K+D L+
Sbjct: 383 KGTEKGIFQVLKLSYDY----LKT-KNAKCFLYCALFPKAYYIKQDELV 426


>At5g06940.1 68418.m00784 leucine-rich repeat family protein
           contains protein kinase domain, Pfam:PF00069; contains
           leucine-rich repeats, Pfam:PF00560
          Length = 872

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -2

Query: 383 LPF*FYFTKTVSYFEQRYI*NLRIFWNILD**VGSL 276
           L F F+FTKT S+ E   + NL  F    D   GSL
Sbjct: 15  LTFFFFFTKTFSFTENEELGNLLRFKASFDDPKGSL 50


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,308,353
Number of Sequences: 28952
Number of extensions: 127683
Number of successful extensions: 149
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 537681456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)