Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11j14f
(563 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0307 + 19433172-19433606 30 1.5
06_03_0130 + 17004387-17004713,17005114-17005119 29 1.9
05_07_0073 - 27504169-27504882,27504989-27505161,27505302-275054... 29 2.6
02_05_0445 + 29088216-29088362,29089161-29089386,29089903-290899... 29 2.6
11_06_0339 - 22488214-22488254,22488339-22488829,22490233-224904... 28 5.9
05_04_0194 + 18949268-18951514,18952063-18952215,18952304-18954241 28 5.9
02_05_1276 + 35397948-35398298,35398937-35401738,35402085-354023... 28 5.9
12_01_0078 - 639421-639624,639706-639876,640392-640597,640985-64... 27 7.8
05_03_0369 - 13136146-13136175,13136237-13136908,13136926-131370... 27 7.8
01_05_0445 + 22318179-22318229,22321063-22321659,22321795-223221... 27 7.8
01_04_0013 + 15081879-15082370,15093535-15094050 27 7.8
01_01_0879 + 6896587-6896701,6896819-6897005,6897475-6897774,689... 27 7.8
>06_03_0307 + 19433172-19433606
Length = 144
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -2
Query: 427 MTHKGLPSQPSCPPTTARPVSEDAVVAVVATQSYSPGW 314
+T + PS PS P T+ARP A AV A + + GW
Sbjct: 45 LTGQSAPS-PSAPATSARPSRPRARAAVTACPAAAVGW 81
>06_03_0130 + 17004387-17004713,17005114-17005119
Length = 110
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -3
Query: 135 KVPVEEDAPLGVEGGEASEGQAGVGSKAEALRNI 34
K E+AP+ V G E +G+AG+G + E + +
Sbjct: 26 KASAAEEAPVVVAGDEDDDGEAGLGLREEVKKQL 59
>05_07_0073 -
27504169-27504882,27504989-27505161,27505302-27505485,
27505604-27505675,27506173-27506733,27506846-27507145
Length = 667
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = -1
Query: 335 PIVLSRMVDYANLIHIRRFSVVNVIGYVRWLTLIRGS 225
P V+S D + IHIRR V N G+ WL+ I GS
Sbjct: 304 PSVVSHKDDILS-IHIRRGGVDNGQGHSNWLSTISGS 339
>02_05_0445 +
29088216-29088362,29089161-29089386,29089903-29089976,
29090129-29090353
Length = 223
Score = 29.1 bits (62), Expect = 2.6
Identities = 19/43 (44%), Positives = 20/43 (46%)
Frame = -3
Query: 165 GTGGVD*EERKVPVEEDAPLGVEGGEASEGQAGVGSKAEALRN 37
GTG EE VP E DA LG GG+ QA EA N
Sbjct: 5 GTGSSWEEELGVPEESDAILGGGGGDGQRRQATRWELVEARLN 47
>11_06_0339 -
22488214-22488254,22488339-22488829,22490233-22490405,
22492232-22492287,22492814-22492997,22494045-22494078,
22494326-22494390,22494710-22494843,22495066-22495201
Length = 437
Score = 27.9 bits (59), Expect = 5.9
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 160 RTLTTFPGLLWSQYQCRCHQCLEPR 234
+T+ G +WS RC CL+PR
Sbjct: 251 QTIQRIAGFVWSTQLLRCIACLDPR 275
>05_04_0194 + 18949268-18951514,18952063-18952215,18952304-18954241
Length = 1445
Score = 27.9 bits (59), Expect = 5.9
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = -3
Query: 195 GP*QSRERSKGT-GGVD*EERKVPVEEDAPLGVEGGEASEGQAGVGSKAEAL 43
GP + R RS G+ GG +RK ++ E E +E +AG ++ E++
Sbjct: 116 GPSKRRVRSSGSAGGRGARKRKEAEADEEEAEAEAEEEAEAEAGTPARGESM 167
>02_05_1276 +
35397948-35398298,35398937-35401738,35402085-35402306,
35402503-35402562,35402615-35402698,35402740-35402816,
35403147-35403363
Length = 1270
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/21 (61%), Positives = 13/21 (61%)
Frame = -2
Query: 406 SQPSCPPTTARPVSEDAVVAV 344
S PS PP A P S D VVAV
Sbjct: 26 SSPSPPPPAATPPSHDGVVAV 46
>12_01_0078 -
639421-639624,639706-639876,640392-640597,640985-641100,
641669-641855,642104-642338
Length = 372
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 246 PTYITNYIYHGESSNVDQVSVVDHPGEY 329
P + +YIYH SN DQ+ +VD G Y
Sbjct: 143 PQGLHSYIYH--PSNSDQICIVDLHGNY 168
>05_03_0369 -
13136146-13136175,13136237-13136908,13136926-13137016,
13137184-13137416,13137459-13137731,13137877-13138265,
13138325-13139156,13139847-13139922,13140027-13140414,
13141395-13141748,13142069-13142333,13143366-13143716
Length = 1317
Score = 27.5 bits (58), Expect = 7.8
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -2
Query: 415 GLPSQPSCPPTTARP-VSEDAVVAVVATQSYSP 320
GLP QP PP+TA P D + A++ + SP
Sbjct: 29 GLPLQPPTPPSTAPPSTGGDELPALLLRRRSSP 61
>01_05_0445 +
22318179-22318229,22321063-22321659,22321795-22322187,
22323410-22323481
Length = 370
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -2
Query: 475 LTDSFPGIMSPMCQALMTHKGLPSQPSCPPT 383
+T +F + P C G PS PS PPT
Sbjct: 28 ITTAFWELQLPACSDEPISSGTPSSPSSPPT 58
>01_04_0013 + 15081879-15082370,15093535-15094050
Length = 335
Score = 27.5 bits (58), Expect = 7.8
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -3
Query: 165 GTGGVD*EERKVPVEEDAPLGVEGGEASEGQAGVGSKAE 49
G+GGVD E K +D P + S G G GS +
Sbjct: 268 GSGGVDAEGSKQKNNDDCPKTTTTNDGSGGGDGAGSSVQ 306
>01_01_0879 +
6896587-6896701,6896819-6897005,6897475-6897774,
6897877-6898133,6898596-6898825,6899122-6899247,
6900195-6900374,6901079-6901216,6901515-6901670,
6902409-6902699,6902923-6903162
Length = 739
Score = 27.5 bits (58), Expect = 7.8
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -2
Query: 445 PMCQALMTHKGLPSQPSCPPTTARPVSEDAVVAVVATQSYSP 320
P AL+ H+ LPS S PP + S V + VA +S +P
Sbjct: 15 PAAAALLHHRPLPSSRSLPPLPSLG-SAGFVYSTVADESTAP 55
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,247,100
Number of Sequences: 37544
Number of extensions: 303560
Number of successful extensions: 1178
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1176
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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