Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11j14f
         (563 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.65 
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)                    29   3.5  
SB_16619| Best HMM Match : Dynamitin (HMM E-Value=1.1)                 28   4.6  
SB_8499| Best HMM Match : DUF229 (HMM E-Value=0)                       28   6.1  
SB_23377| Best HMM Match : WH1 (HMM E-Value=2.8)                       28   6.1  

>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1597

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 20/61 (32%), Positives = 25/61 (40%)
 Frame = -2

Query: 511  SLPLYIIEAALCLTDSFPGIMSPMCQALMTHKGLPSQPSCPPTTARPVSEDAVVAVVATQ 332
            +LP +I EA L    +FP    P  QA    K  P   +    TA P S+    A    Q
Sbjct: 1249 ALPAFI-EATLQSQAAFPATKIPQSQATFAAKATPKSQATFAATATPQSQATFAAAATPQ 1307

Query: 331  S 329
            S
Sbjct: 1308 S 1308


>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
          Length = 2565

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +3

Query: 414 PLWVIRAWHMGDMIPGKLSVRHNAASIMYNGKEIPVQILR 533
           PL  +R ++  + +  K+ +RH    IMYN   +PV+I+R
Sbjct: 797 PLTRLRVYY--NRVYRKVIIRHGRLVIMYNKMSLPVKIVR 834


>SB_16619| Best HMM Match : Dynamitin (HMM E-Value=1.1)
          Length = 667

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = -3

Query: 183 SRERSKGTGGVD*EERKVPVEEDAPLGVEGGEASEGQAGVGSKAEA 46
           S ERS    G D    +VP  +      EG +A E  +  GS A A
Sbjct: 90  SAERSGDVEGEDLALERVPTADGGASQAEGSKAGEAASATGSDANA 135


>SB_8499| Best HMM Match : DUF229 (HMM E-Value=0)
          Length = 926

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = -2

Query: 463 FPGIMSPMCQALMTHK----GLPSQPSCPPTTARPVSEDAVVAVVATQS 329
           FP  +SP  +  +T +    G  +QP  P  TA+P + DA     AT++
Sbjct: 337 FPEKLSPSKEREVTKQPEAPGATAQPEAPDATAQPEAPDATAQPEATET 385


>SB_23377| Best HMM Match : WH1 (HMM E-Value=2.8)
          Length = 355

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 234 DQGQPTYITNYIYHGESSNVDQVSVVDHPGEYDWV 338
           +Q  P  I  YI   E   +DQ+ V+ HP   D +
Sbjct: 298 EQPSPKDIIKYILGDEVETLDQIQVIAHPQASDMI 332


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,776,757
Number of Sequences: 59808
Number of extensions: 321832
Number of successful extensions: 1184
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)