Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11j14f
         (563 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66498-1|CAA91290.1|  304|Caenorhabditis elegans Hypothetical pr...    28   4.0  
U42439-7|AAA83511.1|  304|Caenorhabditis elegans Collagen protei...    28   4.0  
L23648-8|AAA28030.1|  503|Caenorhabditis elegans Hypothetical pr...    28   5.3  
U23515-7|AAK93859.3|  868|Caenorhabditis elegans Larp (rna bindi...    27   7.0  
U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna bindi...    27   7.0  

>Z66498-1|CAA91290.1|  304|Caenorhabditis elegans Hypothetical
           protein M195.1 protein.
          Length = 304

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 120 EDAPLGVEGGEASEGQAGVGSKAEALRNIDSFC 22
           ED   G +G    +GQ G  + AEA+   D FC
Sbjct: 125 EDGRDGNDGQPGPDGQPGSDAPAEAIPTADDFC 157


>U42439-7|AAA83511.1|  304|Caenorhabditis elegans Collagen protein
           110 protein.
          Length = 304

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 171 SKGTGGVD*EERKVPVEEDAPLGVEGGEASEGQAG 67
           +KG  G D E  +V   +  P G +G E   G+AG
Sbjct: 199 TKGEDGADGEPGEVDTSDVGPPGDDGDEGQSGEAG 233


>L23648-8|AAA28030.1|  503|Caenorhabditis elegans Hypothetical
           protein F44B9.2 protein.
          Length = 503

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
 Frame = -2

Query: 553 LRSGAQNLNI*TGISLPLYIIEAALCLTDSFPGIMSPMCQALMTHKGLPSQP-SCPPTT- 380
           +R      ++ T  + P  IIEAA  L+D+F   +    + +    G P    S PP T 
Sbjct: 11  IREDTAQSSVPTSPTTPATIIEAAPVLSDAFDKPILKSVETISVSNGPPEVTISAPPPTP 70

Query: 379 -ARPVSEDAVVAVVAT 335
            A P++      V++T
Sbjct: 71  PAAPLAPQITPMVLST 86


>U23515-7|AAK93859.3|  868|Caenorhabditis elegans Larp (rna binding
           la related protein)homolog protein 1, isoform a protein.
          Length = 868

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -2

Query: 457 GIMSPMCQALMTHKGLPSQPSC-PPTTARPVSEDAVVAVVATQ 332
           G+ SP+      +  +P  P   PPT  RPV++D +   V  Q
Sbjct: 288 GVTSPVSNGEPINTAIPFAPIYNPPTAPRPVTDDTLKEYVRKQ 330


>U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna binding
           la related protein)homolog protein 1, isoform b protein.
          Length = 1065

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -2

Query: 457 GIMSPMCQALMTHKGLPSQPSC-PPTTARPVSEDAVVAVVATQ 332
           G+ SP+      +  +P  P   PPT  RPV++D +   V  Q
Sbjct: 485 GVTSPVSNGEPINTAIPFAPIYNPPTAPRPVTDDTLKEYVRKQ 527


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,371,763
Number of Sequences: 27780
Number of extensions: 229477
Number of successful extensions: 666
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)