Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11j14f
         (563 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g14920.1 68418.m01750 gibberellin-regulated family protein si...    29   2.8  
At1g76500.1 68414.m08901 DNA-binding family protein contains Pfa...    28   3.7  
At4g17550.1 68417.m02624 transporter-related similar to cAMP ind...    27   6.5  
At3g27200.1 68416.m03401 plastocyanin-like domain-containing pro...    27   8.7  

>At5g14920.1 68418.m01750 gibberellin-regulated family protein
           similar to SP|P46689 Gibberellin-regulated protein 1
           precursor {Arabidopsis thaliana}; contains Pfam profile
           PF02704: Gibberellin regulated protein
          Length = 275

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = -2

Query: 460 PGIMSPMCQALMTHKGLPSQPSCPPTTARPVSEDAVVAVVATQSYSP 320
           P + SP  Q   T+K  P+ P  PPTT  PV        V   +Y+P
Sbjct: 145 PPVQSPPVQP-PTYKP-PTSPVKPPTTTPPVKPPTTTPPVQPPTYNP 189


>At1g76500.1 68414.m08901 DNA-binding family protein contains Pfam
           domain, PF02178: AT hook motif
          Length = 302

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 135 KVPVEEDAPLGVEGGEASEGQAGVGSKAEA 46
           ++P+E++   G EGGE  EG  G G    A
Sbjct: 227 RLPLEDEGGEGGEGGEVGEGGGGEGGPPPA 256


>At4g17550.1 68417.m02624 transporter-related similar to cAMP
           inducible 2 protein [Mus musculus] GI:4580997, glycerol
           3-phosphate permease [Homo sapiens] GI:7543982; contains
           Pfam profile PF00083: major facilitator superfamily
           protein
          Length = 544

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -3

Query: 150 D*EERKVPVEEDAPLGVEGGEASEGQAGVGSKAEALRNI 34
           D EE +  VEED    VEG    EG +G GS  E  R++
Sbjct: 283 DVEEEEEEVEEDLGTDVEGD--GEGSSGSGSGYENKRSV 319


>At3g27200.1 68416.m03401 plastocyanin-like domain-containing
           protein contains similarity to uclacyanin I GI:3399767
           GB:AAC32038 from [Arabidopsis thaliana]
          Length = 174

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
 Frame = +3

Query: 360 SSLTGRAVVGGHEGWDGS---PLWVI-RAWHMGDMIPGKLSVRHNAASI 494
           ++L  R V+GG +GW+ S     W   +++ +GD I  K S  H+   +
Sbjct: 20  TALAARHVIGGSQGWEQSVDFDSWSSDQSFKVGDQIVFKYSELHSVVEL 68


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,834,905
Number of Sequences: 28952
Number of extensions: 217365
Number of successful extensions: 566
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)