Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11j11r
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch...    29   0.53 
SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual    26   4.9  
SPCC417.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         25   8.6  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    25   8.6  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    25   8.6  

>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 577

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = +3

Query: 105 NGDTFKNIRNIVIHFYIFIFVN*FLPLSFKSYLYKITDIFC 227
           N D+F ++ +++  FYI++F+    P   + ++Y I  + C
Sbjct: 303 NLDSFLDLSSVISPFYIWLFIFIIQPHKEERFMYPIYPVLC 343


>SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 8/31 (25%), Positives = 19/31 (61%)
 Frame = +3

Query: 261 FFYFYCLGVWTSSQPIWLLEPIDIYNVNAPH 353
           +F F  L +W+   P++ +  + +++V AP+
Sbjct: 99  YFSFTMLYIWSWKHPLYRISILGLFDVKAPY 129


>SPCC417.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 180

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 21/72 (29%), Positives = 35/72 (48%)
 Frame = +1

Query: 13  SSDLKLLYIFFAFVSFADLSRQICYIESQNSTETPLRT*GIL*YIFTFSFSLISSCL*VS 192
           SS+  L Y FF  ++F   S ++  ++   + E PL+    L + F  SF+ +   L  S
Sbjct: 29  SSEGPLFYFFFGSLTF---SIEVSILKE--TLEKPLQIITFLFFSFLTSFNDLPYVLSFS 83

Query: 193 NHICTKLQIFSV 228
              C K +IF +
Sbjct: 84  APECVKNEIFKI 95


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 97  DFQYSKFVSIGQQRKQMQKK 38
           DF +SKF+   QQR++ Q K
Sbjct: 319 DFCFSKFMEKNQQRREQQDK 338


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 97  DFQYSKFVSIGQQRKQMQKK 38
           DF +SKF+   QQR++ Q K
Sbjct: 319 DFCFSKFMEKNQQRREQQDK 338


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,780,459
Number of Sequences: 5004
Number of extensions: 55148
Number of successful extensions: 121
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)