Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11j11r
         (743 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106573-5|AAF02104.2|  358|Caenorhabditis elegans Seven tm rece...    29   2.6  
AL117202-3|CAB55094.2|  691|Caenorhabditis elegans Hypothetical ...    28   6.1  
U12965-7|AAY86205.1|  528|Caenorhabditis elegans Hypothetical pr...    28   8.0  

>AF106573-5|AAF02104.2|  358|Caenorhabditis elegans Seven tm
           receptor protein 79 protein.
          Length = 358

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 33/119 (27%), Positives = 49/119 (41%), Gaps = 5/119 (4%)
 Frame = +3

Query: 24  KIVVHFFCICF-LC*PIETNLLY*KSKFNGDTFKNIRNIVIHFYI----FIFVN*FLPLS 188
           K+   F  ICF    PI   LLY     +G    + + ++I F +    F  VN    ++
Sbjct: 11  KVTNWFNIICFSTSIPINFFLLYCVVTQSGRNIGDYKTLLIWFAVHCMAFPAVNLITNMN 70

Query: 189 FKSYLYKITDIFCY*FSRFNKVNIFFYFYCLGVWTSSQPIWLLEPIDIYNVNAPHTLRY 365
           F  Y ++ T       +RFN       F CLGVW      W+     I ++NA    R+
Sbjct: 71  F--YTHEATLFILTVANRFN-------FPCLGVWMLLATNWICCGYSILSLNAQFAFRW 120


>AL117202-3|CAB55094.2|  691|Caenorhabditis elegans Hypothetical
           protein Y47D3A.4 protein.
          Length = 691

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -1

Query: 179 QELINENENVKMYYNIPYVLKGVSVEF*LSI*QICLDRSAKETNAK 42
           +ELI   + ++ YY IP  L+ V  E    +    L+   KET  K
Sbjct: 565 EELIERRDTLEPYYQIPKRLQRVGTEIEKIVETFALNDEIKETKPK 610


>U12965-7|AAY86205.1|  528|Caenorhabditis elegans Hypothetical
           protein F23F12.13 protein.
          Length = 528

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 13  SSDLKLLYIFFAFVSFADLSRQICYIESQNSTETPLRT*GI 135
           S DL ++ I    VSF +++   CY+ +     T +RT GI
Sbjct: 388 SRDLAIIIINIIGVSFIEITWDACYLVAVECFPTKIRTIGI 428


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,091,565
Number of Sequences: 27780
Number of extensions: 303594
Number of successful extensions: 580
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)