Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11j11f
         (603 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    38   9e-04
SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi...    27   1.6  
SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr 2|||M...    26   3.7  
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   6.4  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    25   6.4  
SPCC1223.02 |nmt1|thi3|no message in thiamine Nmt1|Schizosacchar...    25   6.4  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    25   8.5  
SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ...    25   8.5  

>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 38.3 bits (85), Expect = 9e-04
 Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
 Frame = +2

Query: 182 SIASKGLPQDDKPYNPFEHR-NVQHP-NTTLG-SILHLLKSCLGSGILAMPAAFKNSGLV 352
           S+    +P + +P      R  +Q P N + G ++L LLKS +G+G+L +P AFK  GLV
Sbjct: 247 SLIHSTVPSEQEPLISRHGRYKLQTPGNASNGKAVLLLLKSFVGTGVLFLPKAFKLGGLV 306

Query: 353 AGVIGTILAGFVCTHTVHILVKTSQQI 433
                 ++ G +      +L++T  ++
Sbjct: 307 FSSATLLIVGVLSHICFLLLIQTRMKV 333


>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 289

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 277 SSSPEILSWLWYTGDACCVQEFW 345
           SS    + W WYT DAC + + W
Sbjct: 116 SSCKLSMYWNWYTIDACFITKHW 138


>SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = -1

Query: 432 ICCDVFTKICTVCVQTKPARIVPMTPATRPEFLNAAGIASIPEPRQDF 289
           +C    + I        P RI P+ PATRP  L    I  + +   DF
Sbjct: 219 LCASSRSSILDTLTPDIPTRIFPLYPATRPIELFEHAIYLLNQDVNDF 266


>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 260 TTLGSILHLLKSCLGSGILAMPAAFKNSGLVAGV 361
           TTL +I+H   S   +  +A    F+++G V GV
Sbjct: 462 TTLVAIIHASPSAFQASAIATSYLFRSNGCVLGV 495


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 340 ILERSRHR-QYTRAKTGFQEMKNRPQCRVRMLHISMFKR 227
           +L R +H+ ++ + +T    MKN+P  +      SMF+R
Sbjct: 878 LLRRPKHKVKHAKVETRESPMKNKPTKKQHKRAFSMFER 916


>SPCC1223.02 |nmt1|thi3|no message in thiamine
           Nmt1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -1

Query: 303 PRQDFRR*RIDPNVVLGCCTF 241
           PR D +  RID    LGCC F
Sbjct: 177 PRSDVQMLRIDRLANLGCCCF 197


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
            Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 129  LSTLTDWLLFFSIMALSCTKFTFNKVLHLIKT 34
            LSTLT+W++ F   A S  K  +     L KT
Sbjct: 927  LSTLTNWIMEFEKWAPSVKKIAYKGPPQLRKT 958


>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 477 HVSAKLNEGLFASTQICCDVFTKICTV 397
           H+  ++  G FAS ++C D   KI  V
Sbjct: 11  HIGREIGTGAFASVRLCYDDNAKIYAV 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,528,153
Number of Sequences: 5004
Number of extensions: 53521
Number of successful extensions: 147
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)