Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11j11f
(603 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31490| Best HMM Match : Aa_trans (HMM E-Value=4.9e-31) 42 4e-04
SB_58414| Best HMM Match : Aa_trans (HMM E-Value=3.1e-35) 39 0.003
SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.005
SB_15337| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_43964| Best HMM Match : Aa_trans (HMM E-Value=9.2e-05) 35 0.044
SB_27864| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.044
SB_36054| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.058
SB_27407| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.058
SB_40988| Best HMM Match : Sm_multidrug_ex (HMM E-Value=1.4) 34 0.10
SB_745| Best HMM Match : Aa_trans (HMM E-Value=0.047) 31 0.72
SB_46723| Best HMM Match : Sm_multidrug_ex (HMM E-Value=1.4) 31 0.95
SB_27382| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.95
SB_48198| Best HMM Match : Aa_trans (HMM E-Value=0.0018) 30 1.7
SB_54782| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_59393| Best HMM Match : G5 (HMM E-Value=1.6) 28 5.1
SB_10932| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15) 28 6.7
SB_54489| Best HMM Match : Aa_trans (HMM E-Value=0.02) 28 6.7
SB_56124| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_19550| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
>SB_31490| Best HMM Match : Aa_trans (HMM E-Value=4.9e-31)
Length = 974
Score = 41.9 bits (94), Expect = 4e-04
Identities = 16/46 (34%), Positives = 29/46 (63%)
Frame = +2
Query: 281 HLLKSCLGSGILAMPAAFKNSGLVAGVIGTILAGFVCTHTVHILVK 418
++LK+ +G+ LA+P AFK SGL G++ +L + H +++K
Sbjct: 391 NVLKAFIGTSYLALPFAFKQSGLALGIVALVLIATITDHCCQMIIK 436
>SB_58414| Best HMM Match : Aa_trans (HMM E-Value=3.1e-35)
Length = 436
Score = 39.1 bits (87), Expect = 0.003
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Frame = +2
Query: 233 EHRNVQHPNT-TLGSILHLLKSCLGSGILAMPAAFKNSGLVAGVIGTILAGFVCTHTVHI 409
+ R+V T T + L+ + GSG +A+P A GL AG +G IL + T+T HI
Sbjct: 34 QERDVNDGTTSTWRATLNTINYMEGSGFVALPYAVARGGL-AGALGFILVPIIFTYTAHI 92
Query: 410 LVKTSQQ--ICVEAKRPSLSFAETCGAAF 490
+V + E KR S+ E A +
Sbjct: 93 MVDCLYEGGRYTEKKRVRSSYEEIATAVW 121
>SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 744
Score = 38.3 bits (85), Expect = 0.005
Identities = 23/91 (25%), Positives = 43/91 (47%)
Frame = +2
Query: 164 GFQSTLSIASKGLPQDDKPYNPFEHRNVQHPNTTLGSILHLLKSCLGSGILAMPAAFKNS 343
G S ++ S+ P + P + + + T L SI L+ + +G G+L++P AF+
Sbjct: 200 GETSPITTISESTPLINSS-TPIKAEHHERHGTILSSIFTLVSTMIGGGVLSLPFAFQQG 258
Query: 344 GLVAGVIGTILAGFVCTHTVHILVKTSQQIC 436
G V + I TH +++ S++ C
Sbjct: 259 GFVMSSLVLIFVLMASTHGGFLII-NSKKYC 288
>SB_15337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 366
Score = 37.9 bits (84), Expect = 0.006
Identities = 14/38 (36%), Positives = 29/38 (76%)
Frame = +2
Query: 242 NVQHPNTTLGSILHLLKSCLGSGILAMPAAFKNSGLVA 355
++++P + ++ H+LK+ +G G+L++PAA N+G+VA
Sbjct: 68 HLKNPTSEWQTLTHILKANIGPGMLSLPAAMMNAGIVA 105
>SB_43964| Best HMM Match : Aa_trans (HMM E-Value=9.2e-05)
Length = 332
Score = 35.1 bits (77), Expect = 0.044
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +2
Query: 245 VQHPNTTLGSILHLLKSCLGSGILAMPAAFKNSGLV 352
+ + T+ S++HL+K C+G G+ MP A +GL+
Sbjct: 99 MSNTTTSFTSLMHLIKGCVGIGVYGMPLAVAYAGLL 134
>SB_27864| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 116
Score = 35.1 bits (77), Expect = 0.044
Identities = 26/109 (23%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
Frame = +2
Query: 170 QSTLSIASKGLPQDDKPYNPFEHRNVQHPNTTLGSILHLLKSCLGSGILAMPAAFKNSGL 349
++TL + LPQ+ K E ++++ ++T ++ + G+G LA+P A GL
Sbjct: 7 ENTLLDINIELPQEKKTLKSKE--DLRNRSSTWRVTMNTINYMEGTGFLALPYAVSRGGL 64
Query: 350 VAGVIGTILAGFVCTHTVHILVK-TSQQICVEAKRPSLSFAETCGAAFM 493
AG + G + +T ++L++ + + KR S+ + AA++
Sbjct: 65 -AGALSFAFVGILMAYTSYLLIECVYEGKSTKRKRVHTSYRDIAQAAWL 112
>SB_36054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1267
Score = 34.7 bits (76), Expect = 0.058
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +2
Query: 257 NTTLGSILHLLKSCLGSGILAMPAAFKNSGLVAGVIGTILAGFVCTHTVHILV 415
N+T + L+ + G+G LA+P A G +AG +G IL + +T +I V
Sbjct: 876 NSTWRATLNTINYMEGTGFLALPYAVSRGG-IAGALGFILVPIILAYTAYISV 927
>SB_27407| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 34.7 bits (76), Expect = 0.058
Identities = 26/109 (23%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
Frame = +2
Query: 170 QSTLSIASKGLPQDDKPYNPFEHRNVQHPNTTLGSILHLLKSCLGSGILAMPAAFKNSGL 349
++TL + LPQ+ K E ++++ ++T ++ + G+G LA+P A GL
Sbjct: 7 ENTLLDINIELPQEKKTLKSKE--DLRNRSSTWRVTMNTINYMEGTGFLALPYAVARGGL 64
Query: 350 VAGVIGTILAGFVCTHTVHILVK-TSQQICVEAKRPSLSFAETCGAAFM 493
AG + G + +T ++L++ + + KR S+ + AA++
Sbjct: 65 -AGALSFAFVGILMAYTSYLLIECVYEGKSTKRKRVHTSYRDIAQAAWL 112
>SB_40988| Best HMM Match : Sm_multidrug_ex (HMM E-Value=1.4)
Length = 178
Score = 33.9 bits (74), Expect = 0.10
Identities = 25/109 (22%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
Frame = +2
Query: 170 QSTLSIASKGLPQDDKPYNPFEHRNVQHPNTTLGSILHLLKSCLGSGILAMPAAFKNSGL 349
+ TL + LPQ+ + E ++++ ++T ++ + G+G LA+P A GL
Sbjct: 7 EKTLLDINSELPQEKETLTSKE--DLRNRSSTWRVTMNTINYMEGTGFLALPYAVARGGL 64
Query: 350 VAGVIGTILAGFVCTHTVHILVK-TSQQICVEAKRPSLSFAETCGAAFM 493
AG + G + +T ++L++ + + KR S+ + AA++
Sbjct: 65 -AGALSFAFVGILMAYTSYLLIECVYEGKSTKRKRVHTSYRDIAQAAWL 112
>SB_745| Best HMM Match : Aa_trans (HMM E-Value=0.047)
Length = 261
Score = 31.1 bits (67), Expect = 0.72
Identities = 22/61 (36%), Positives = 31/61 (50%)
Frame = +2
Query: 233 EHRNVQHPNTTLGSILHLLKSCLGSGILAMPAAFKNSGLVAGVIGTILAGFVCTHTVHIL 412
E R + NT +I + + G+GILA+P + GL A VI IL + +T IL
Sbjct: 19 EKRPLLAGNTAWRAIFNCVNYLEGAGILAVPYTMQLGGLPA-VIAYILFPILAGYTARIL 77
Query: 413 V 415
V
Sbjct: 78 V 78
>SB_46723| Best HMM Match : Sm_multidrug_ex (HMM E-Value=1.4)
Length = 163
Score = 30.7 bits (66), Expect = 0.95
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +2
Query: 302 GSGILAMPAAFKNSGLVAGVIGTILAGFVCTHTVHILVK-TSQQICVEAKRPSLSFAETC 478
G+G LA+P A GL AG + G + +T ++L++ + + KR S+ +
Sbjct: 34 GTGFLALPYAVARGGL-AGALSFAFVGILMAYTSYLLIECVYEGKSTKRKRVHTSYRDIA 92
Query: 479 GAAFM 493
AA++
Sbjct: 93 QAAWL 97
>SB_27382| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 30.7 bits (66), Expect = 0.95
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +2
Query: 302 GSGILAMPAAFKNSGLVAGVIGTILAGFVCTHTVHILVK-TSQQICVEAKRPSLSFAETC 478
G+G LA+P A GL AG + G + +T ++L++ + + KR S+ +
Sbjct: 3 GTGFLALPYAVARGGL-AGALSFAFVGILMAYTSYLLIECVYEGKSTKRKRVHTSYRDIA 61
Query: 479 GAAFM 493
AA++
Sbjct: 62 QAAWL 66
>SB_48198| Best HMM Match : Aa_trans (HMM E-Value=0.0018)
Length = 288
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +2
Query: 302 GSGILAMPAAFKNSGLVAGVIGTILAGFVCTHTVHILV 415
G+G+L +P A + G++ V+G I+ + +T IL+
Sbjct: 73 GTGVLGLPYAVREGGIIV-VLGLIILAVISNYTGQILI 109
>SB_54782| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 28.3 bits (60), Expect = 5.1
Identities = 27/104 (25%), Positives = 46/104 (44%)
Frame = +2
Query: 272 SILHLLKSCLGSGILAMPAAFKNSGLVAGVIGTILAGFVCTHTVHILVKTSQQICVEAKR 451
+ ++ + +G+GILAMP + +G GV IL + +T IL+ + E
Sbjct: 31 AFFNIFNANMGTGILAMPYVIRLTG-YWGVAIVILVALLGNYTGKILIHCLHENTPEGHF 89
Query: 452 PSLSFAETCGAAFMYGPKRLRSWSGAIQKFVDYSLSVTYLSVLC 583
++A+ G AF PK R F +S +L ++C
Sbjct: 90 NKFTYAD-LGEAFW--PKYGRLMVHITNFFEQFSHCTLFL-IMC 129
>SB_59393| Best HMM Match : G5 (HMM E-Value=1.6)
Length = 278
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = +2
Query: 200 LPQDDK--PYNPFEHRNVQHPNTTLGSILHLLKSCLGSGILAMPAAFKNSGLVAGVI 364
L +DDK PY RN HP T L L +G++ P + N+ L+ +I
Sbjct: 166 LDKDDKNEPYFASAWRNATHPKTQHEKPKPLKLDYLFAGLVVRPQSVDNNSLLVTII 222
>SB_10932| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 494
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +2
Query: 44 KCKTLLNVNFVQDKAIMEKNKSQSVKVDNFSSTIGLAANPGFQSTLSIASKGLPQDDKP 220
K K L +N Q KA+ + S ++ SST+ LA+ S+ + S +D P
Sbjct: 174 KGKINLQINLAQSKAVSTSMSTLSARLSELSSTLALASAKLQPSSKPVLSHRSFKDSMP 232
>SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15)
Length = 563
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -1
Query: 525 PDQERNLLGPYIKAAPHVSAKLNEGLFASTQICCDVFTKICTVCV 391
P Q+R+ L + H+S + L+ D F++IC VC+
Sbjct: 168 PKQQRDNLATLLADFLHLSCCAHSQLYQFVLDSIDAFSEICLVCI 212
>SB_54489| Best HMM Match : Aa_trans (HMM E-Value=0.02)
Length = 385
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = +2
Query: 302 GSGILAMPAAFKNSGLVAGVIGTILAGFVCTHTVHILVK 418
G GILA+P++ +G+++G I + F+ + L++
Sbjct: 27 GVGILALPSSIAKAGIISGSICLTIVAFMAFVSATFLIE 65
>SB_56124| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 310
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +2
Query: 236 HRNVQHPNTTLGSILHLLKSCLGSGILAMPAAFKNSGLVAGVIGT 370
H H + ++ L+ S L +G+LA+PA NS ++A ++ T
Sbjct: 13 HMTYNHVKSPAHTLCVLVTSIL-NGVLALPAVLLNSIVIAAILKT 56
>SB_19550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 810
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 384 KPARIVPMTPATRPEFLNAAGIASIPEP 301
K ++ VP P+TR L +A +A +P P
Sbjct: 49 KNSKSVPRVPSTRCAVLQSASLAPVPHP 76
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,050,266
Number of Sequences: 59808
Number of extensions: 395491
Number of successful extensions: 1066
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1063
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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