Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11j11f
         (603 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   4.0  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   5.3  
AY078400-1|AAL83703.1|   31|Apis mellifera major royal jelly pro...    22   5.3  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   7.0  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   7.0  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          21   9.3  
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              21   9.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.3  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   9.3  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 119 KVDNFSSTIG-LAANPGFQSTLSIASKGLPQDDKPYNPFE 235
           +V+   S +G L  +   ++ + + S  +P DD+PY  F+
Sbjct: 129 EVNILKSIVGQLQVDTQGENAVKVNSVQVPTDDEPYASFK 168


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -1

Query: 120 LTDWLLFFSIMALSCTKFTFNKVLHLIKTSH 28
           +T WLL    + ++C   T   V H  K+++
Sbjct: 1   MTKWLLLVVCLGIACQDVTSAAVNHQRKSAN 31


>AY078400-1|AAL83703.1|   31|Apis mellifera major royal jelly
           protein MRJP3 protein.
          Length = 31

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -1

Query: 120 LTDWLLFFSIMALSCTKFTFNKVLHLIKTSH 28
           +T WLL    + ++C   T   V H  K+++
Sbjct: 1   MTKWLLLVVCLGIACQDVTSAAVNHQRKSAN 31


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/47 (21%), Positives = 20/47 (42%)
 Frame = +1

Query: 265 IGVDSSSPEILSWLWYTGDACCVQEFWSSRWCHWHYPSWFRLYTHCT 405
           +G+D   P +   ++ +G   CV     +  C + +  W     +CT
Sbjct: 128 VGIDLEMPSVECIVFNSGTILCVPFTTYTPVCEYDHTWWPYDILNCT 174


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -1

Query: 120 LTDWLLFFSIMALSCTKFTFNKVLHLIKTS 31
           +T+WLL    ++++C   T    +H  K+S
Sbjct: 1   MTNWLLLIVCLSIACQDVT--SAIHQRKSS 28


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -2

Query: 596 NNVKRIEHSNMSPRASNRRIFGLLRTKSVIF 504
           N+V  IEH      A   + F L   K V+F
Sbjct: 91  NSVVYIEHLTKLNNAIEEKRFELTNRKGVVF 121


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -1

Query: 144 IVEEKLSTLTDWLLFFSIMALSCTKFTFNKVLHL 43
           I+E +     D   FF  +AL+C      K LH+
Sbjct: 95  IIEGQYHDDEDLKTFFHKIALTCEDDVHRKFLHV 128


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -1

Query: 198 PFDAMLNVDWNPGL 157
           PF+   ++DW PG+
Sbjct: 681 PFNCNCSMDWLPGI 694


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 10/40 (25%), Positives = 17/40 (42%)
 Frame = -1

Query: 450 LFASTQICCDVFTKICTVCVQTKPARIVPMTPATRPEFLN 331
           LF    +   ++  +C + V  +      M+P  R  FLN
Sbjct: 317 LFTMILVTLSIWITVCVLNVHFRSPSTHNMSPWVRQVFLN 356


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,912
Number of Sequences: 438
Number of extensions: 3428
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)