Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11j11f
(603 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g56200.1 68416.m06246 amino acid transporter family protein l... 42 4e-04
At3g11900.1 68416.m01459 amino acid transporter family protein l... 41 5e-04
At1g80510.1 68414.m09435 amino acid transporter family protein s... 41 5e-04
At5g38820.1 68418.m04695 amino acid transporter family protein l... 40 0.002
At3g30390.1 68416.m03836 amino acid transporter family protein l... 37 0.012
At2g40420.1 68415.m04985 amino acid transporter family protein s... 36 0.027
At5g16740.1 68418.m01960 amino acid transporter family protein l... 35 0.048
At4g38250.1 68417.m05402 amino acid transporter family protein l... 34 0.063
At5g15130.1 68418.m01773 WRKY family transcription factor contai... 33 0.15
At1g74600.1 68414.m08641 pentatricopeptide (PPR) repeat-containi... 33 0.19
At5g43040.1 68418.m05254 DC1 domain-containing protein contains ... 32 0.25
At5g19500.1 68418.m02323 tryptophan/tyrosine permease family pro... 32 0.25
At5g07570.1 68418.m00867 glycine/proline-rich protein contains s... 32 0.34
At5g51150.1 68418.m06342 expressed protein similar to unknown pr... 31 0.44
At2g42005.1 68415.m05196 amino acid transporter family protein l... 31 0.44
At1g44100.1 68414.m05094 amino acid permease 5, putative (AAP5) ... 31 0.44
At1g58360.1 68414.m06638 amino acid permease I (AAP1) identical ... 30 1.0
At5g41800.1 68418.m05089 amino acid transporter family protein s... 30 1.4
At5g37010.1 68418.m04438 expressed protein 30 1.4
At4g35180.1 68417.m05001 amino acid transporter family protein s... 30 1.4
At3g01760.1 68416.m00114 lysine and histidine specific transport... 29 1.8
At1g61270.1 68414.m06905 lysine and histidine specific transport... 29 1.8
At2g01730.1 68415.m00101 metallo-beta-lactamase family protein s... 29 2.4
At1g10650.1 68414.m01207 expressed protein 29 2.4
At5g63850.1 68418.m08015 amino acid transporter 4, putative (AAP... 29 3.1
At2g43560.1 68415.m05412 immunophilin / FKBP-type peptidyl-proly... 29 3.1
At5g41590.1 68418.m05053 hypothetical protein contains Pfam prof... 28 5.5
At5g15550.2 68418.m01821 transducin family protein / WD-40 repea... 28 5.5
At5g15550.1 68418.m01820 transducin family protein / WD-40 repea... 28 5.5
At3g59970.3 68416.m06695 methylenetetrahydrofolate reductase 1 (... 28 5.5
At3g59970.2 68416.m06694 methylenetetrahydrofolate reductase 1 (... 28 5.5
At3g59970.1 68416.m06693 methylenetetrahydrofolate reductase 1 (... 28 5.5
At1g10010.1 68414.m01129 amino acid permease, putative similar t... 28 5.5
At4g00200.1 68417.m00021 DNA-binding family protein contains a A... 27 7.2
At3g06530.1 68416.m00757 BAP28-related similar to Protein BAP28 ... 27 7.2
At5g22200.1 68418.m02584 harpin-induced family protein / HIN1 fa... 27 9.6
At5g09220.1 68418.m01045 amino acid permease 2 (AAP2) identical ... 27 9.6
At3g23540.1 68416.m02962 expressed protein ; expression supporte... 27 9.6
At3g02030.1 68416.m00166 hydrolase, alpha/beta fold family prote... 27 9.6
At2g44160.1 68415.m05493 methylenetetrahydrofolate reductase 2 (... 27 9.6
At1g52430.1 68414.m05919 ubiquitin carboxyl-terminal hydrolase-r... 27 9.6
>At3g56200.1 68416.m06246 amino acid transporter family protein low
similarity to N system amino acids transporter NAT-1
[Mus musculus] GI:7406950; belongs to INTERPRO:IPR002422
amino acid/polyamine transporter, family II
Length = 435
Score = 41.5 bits (93), Expect = 4e-04
Identities = 19/58 (32%), Positives = 37/58 (63%)
Frame = +2
Query: 251 HPNTTLGSILHLLKSCLGSGILAMPAAFKNSGLVAGVIGTILAGFVCTHTVHILVKTS 424
H ++T G + ++ S +G+GI++MPAAFK G+V + + ++ T +V L+K++
Sbjct: 21 HGSSTSGIVFNVSTSIIGAGIMSMPAAFKVLGIVPAFLIITIIAWLSTISVGFLMKST 78
>At3g11900.1 68416.m01459 amino acid transporter family protein low
similarity to proton/amino acid transporter 1 [Mus
musculus] GI:21908024; belongs to INTERPRO:IPR002422
amino acid/polyamine transporter, family II
Length = 432
Score = 41.1 bits (92), Expect = 5e-04
Identities = 19/57 (33%), Positives = 37/57 (64%)
Frame = +2
Query: 263 TLGSILHLLKSCLGSGILAMPAAFKNSGLVAGVIGTILAGFVCTHTVHILVKTSQQI 433
TLG+I+ S +G+G+L +P AF+ +G +AG +G I+ GF + + +L++ ++
Sbjct: 36 TLGNII---VSIVGTGVLGLPYAFRIAGWLAGSLGVIIVGFATYYCMLLLIQCRDKL 89
>At1g80510.1 68414.m09435 amino acid transporter family protein
similar to amino acid transporter system N2 [Rattus
norvegicus] GI:14578932; contains Pfam profile PF01490:
Transmembrane amino acid transporter protein
Length = 489
Score = 41.1 bits (92), Expect = 5e-04
Identities = 20/52 (38%), Positives = 32/52 (61%)
Frame = +2
Query: 269 GSILHLLKSCLGSGILAMPAAFKNSGLVAGVIGTILAGFVCTHTVHILVKTS 424
G++ +L S +G+GI+A+PA K GLV G + IL + +V +LV+ S
Sbjct: 79 GAVFNLTTSIIGAGIMALPATMKVLGLVLGFVLIILMALLSEISVELLVRFS 130
>At5g38820.1 68418.m04695 amino acid transporter family protein low
similarity to N system amino acids transporter NAT-1
[Mus musculus] GI:7406950; contains Pfam profile
PF01490: Transmembrane amino acid transporter protein
Length = 456
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/52 (30%), Positives = 32/52 (61%)
Frame = +2
Query: 269 GSILHLLKSCLGSGILAMPAAFKNSGLVAGVIGTILAGFVCTHTVHILVKTS 424
G++ +L + +G+GI+A+PA K GL+ G+ +L F+ ++ L++ S
Sbjct: 39 GAVFNLATTIIGAGIMALPATMKILGLIPGITIIVLMAFLTDASIEFLLRFS 90
>At3g30390.1 68416.m03836 amino acid transporter family protein low
similarity to neuronal glutamine transporter [Rattus
norvegicus] GI:6978016; belongs to INTERPRO:IPR002422
amino acid/polyamine transporter, family II
Length = 460
Score = 36.7 bits (81), Expect = 0.012
Identities = 15/53 (28%), Positives = 32/53 (60%)
Frame = +2
Query: 269 GSILHLLKSCLGSGILAMPAAFKNSGLVAGVIGTILAGFVCTHTVHILVKTSQ 427
G++ +L + +G+GI+A+PA K GL G+ ++ F+ ++ L++ S+
Sbjct: 47 GAVFNLATTIIGAGIMALPATMKILGLGLGITMIVVMAFLTDASIEFLLRFSK 99
>At2g40420.1 68415.m04985 amino acid transporter family protein
similar to neuronal glutamine transporter [Rattus
norvegicus] GI:6978016; contains Pfam profile PF01490:
Transmembrane amino acid transporter protein
Length = 440
Score = 35.5 bits (78), Expect = 0.027
Identities = 15/52 (28%), Positives = 33/52 (63%)
Frame = +2
Query: 269 GSILHLLKSCLGSGILAMPAAFKNSGLVAGVIGTILAGFVCTHTVHILVKTS 424
G++ ++ S +G+GI+A+PAAFK G++ + ++ ++ + L+K+S
Sbjct: 28 GAVFNISTSIVGAGIMAIPAAFKVLGVIPSLSIIVIIAWLSNVSAGFLMKSS 79
>At5g16740.1 68418.m01960 amino acid transporter family protein low
similarity to lysosomal amino acid transporter 1 [Rattus
norvegicus] GI:14571904; belongs to INTERPRO:IPR002422
amino acid/polyamine transporter, family II
Length = 426
Score = 34.7 bits (76), Expect = 0.048
Identities = 24/95 (25%), Positives = 47/95 (49%)
Frame = +2
Query: 206 QDDKPYNPFEHRNVQHPNTTLGSILHLLKSCLGSGILAMPAAFKNSGLVAGVIGTILAGF 385
+ +KP ++ L S+++++ +G G L+MP A ++ G ++ + I G
Sbjct: 16 EHEKPVRELVLEAASENSSFLHSVINMVGMLIGLGQLSMPYAVESGGWMS-IFLLISFGI 74
Query: 386 VCTHTVHILVKTSQQICVEAKRPSLSFAETCGAAF 490
+ T+T HIL K C+ S S+++ +AF
Sbjct: 75 LTTYTSHILGK-----CIRRNPKSKSYSDIGYSAF 104
>At4g38250.1 68417.m05402 amino acid transporter family protein low
similarity to lysosomal amino acid transporter 1 [Rattus
norvegicus] GI:14571904; contains Pfam profile PF01490:
Transmembrane amino acid transporter protein
Length = 436
Score = 34.3 bits (75), Expect = 0.063
Identities = 14/45 (31%), Positives = 28/45 (62%)
Frame = +2
Query: 299 LGSGILAMPAAFKNSGLVAGVIGTILAGFVCTHTVHILVKTSQQI 433
+G+G+L +P AFK +G + GV+ + + H + +LV T +++
Sbjct: 48 VGAGVLGLPYAFKRTGWLMGVLLLVSVSVLTHHCMMLLVYTRRKL 92
>At5g15130.1 68418.m01773 WRKY family transcription factor contains
Pfam profile: PF03106 WRKY DNA -binding domain; TMV
response-related gene product, Nicotiana tabacum,
EMBL:AB024510
Length = 548
Score = 33.1 bits (72), Expect = 0.15
Identities = 27/108 (25%), Positives = 50/108 (46%)
Frame = +2
Query: 53 TLLNVNFVQDKAIMEKNKSQSVKVDNFSSTIGLAANPGFQSTLSIASKGLPQDDKPYNPF 232
+LL++NF + ++ S S+ NFSST ++NP + +I G Y P+
Sbjct: 363 SLLSLNFNKFSNSFQRFPSTSL---NFSSTSSTSSNPSTLNLPAIWGNGYSS----YTPY 415
Query: 233 EHRNVQHPNTTLGSILHLLKSCLGSGILAMPAAFKNSGLVAGVIGTIL 376
+ NVQ + LG + +S + A+ + ++A I T++
Sbjct: 416 PYNNVQFGTSNLGKTVQNSQSLTETLTKALTSDPSFHSVIAAAISTMV 463
>At1g74600.1 68414.m08641 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 895
Score = 32.7 bits (71), Expect = 0.19
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +2
Query: 113 SVKVDNFSSTIGLAANPGFQSTLSIASKGLPQDDKPYNPFEHRNVQ 250
S+K+ FS++ L++ F++ LS +SK P+NPF N Q
Sbjct: 11 SLKISPFSTSRLLSSVTNFRNQLSFSSKDSSSSSAPFNPFRFFNDQ 56
>At5g43040.1 68418.m05254 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 551
Score = 32.3 bits (70), Expect = 0.25
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = +2
Query: 377 AGFVCTHTVHILVKTSQQICVEAKRPSLSFAETCGAAFMYGPKRLRSWSGAIQKFV 544
A ++CTH IL +T + + + PS+S T A YG SW G FV
Sbjct: 290 ACYICTHCDFILHETCANLSKKKRHPSVSRQLTLYAKHYYGMDSF-SWDGPFSCFV 344
>At5g19500.1 68418.m02323 tryptophan/tyrosine permease family
protein contains Pfam profile PF03222:
Tryptophan/tyrosine permease family
Length = 505
Score = 32.3 bits (70), Expect = 0.25
Identities = 25/122 (20%), Positives = 54/122 (44%), Gaps = 1/122 (0%)
Frame = +2
Query: 212 DKPYNPFEHRNVQHPNTTLGSILHLLK-SCLGSGILAMPAAFKNSGLVAGVIGTILAGFV 388
++ ++ ++ + +L S + L+ + +G+GILA+PA + SG +A + IL
Sbjct: 92 ERLFSNLNQSTLKRESGSLSSAIFLVAGTTVGAGILAIPAVTQESGFLASAVACILCWAF 151
Query: 389 CTHTVHILVKTSQQICVEAKRPSLSFAETCGAAFMYGPKRLRSWSGAIQKFVDYSLSVTY 568
T ++ + + E +S ++ SWS + + Y+L V Y
Sbjct: 152 MVVTGLLVAEVNVNTMSELGSGGVSLVSMAKRTLGSVGVQVVSWSYLL---IHYTLLVAY 208
Query: 569 LS 574
++
Sbjct: 209 IA 210
>At5g07570.1 68418.m00867 glycine/proline-rich protein contains
similarity to flagelliform silk protein [Nephila
clavipes] gi|7106224|gb|AAF36090
Length = 1504
Score = 31.9 bits (69), Expect = 0.34
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Frame = +1
Query: 292 ILSWLWYTGDACC--VQEFWSSRW-CHWHYPSWFRLYTHCTY 408
I S+LW++ CC FW W C W + WFR +C +
Sbjct: 18 IFSFLWFSRWFCCGLCGRFWFRCWFCCW-FQFWFRCRFYCRF 58
>At5g51150.1 68418.m06342 expressed protein similar to unknown
protein (gb|AAD46013.1)
Length = 531
Score = 31.5 bits (68), Expect = 0.44
Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 1/104 (0%)
Frame = +2
Query: 89 IMEKNKSQSVKVDNFSSTIGLAA-NPGFQSTLSIASKGLPQDDKPYNPFEHRNVQHPNTT 265
I KN++ VKV+ F+S I AA +P S L+ + + K P P
Sbjct: 279 ISSKNEASDVKVEEFASIIPCAAIHPNTNSCLAQNANAMSATFKKTFPLYFSLTFVPYVV 338
Query: 266 LGSILHLLKSCLGSGILAMPAAFKNSGLVAGVIGTILAGFVCTH 397
L + + S + LA+ + +++ ++ +G I F+C H
Sbjct: 339 L-HLQKFMASPYRTSWLAIRDSVRSTSFLSAFVG-IFQAFICAH 380
>At2g42005.1 68415.m05196 amino acid transporter family protein low
similarity to proton/amino acid transporter 1 [Mus
musculus] GI:21908024; contains Pfam profile PF01490:
Transmembrane amino acid transporter protein
Length = 413
Score = 31.5 bits (68), Expect = 0.44
Identities = 13/47 (27%), Positives = 27/47 (57%)
Frame = +2
Query: 299 LGSGILAMPAAFKNSGLVAGVIGTILAGFVCTHTVHILVKTSQQICV 439
+G+G+L +P AFK +G + G++ + H + +LV +++ V
Sbjct: 37 VGAGVLGLPYAFKRTGWLMGLLTLFSVAALINHCMMLLVHIRRKLGV 83
>At1g44100.1 68414.m05094 amino acid permease 5, putative (AAP5)
nearly identical to amino acid permease (AAP5) GI:608673
from [Arabidopsis thaliana]
Length = 480
Score = 31.5 bits (68), Expect = 0.44
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +2
Query: 281 HLLKSCLGSGILAMPAAFKNSGLVAGVIGTILAGFVCTHTVHIL 412
H++ + +GSG+L++ A G + G + +L FV +T +L
Sbjct: 38 HIITAVIGSGVLSLAWAVAQIGWIGGPVAMLLFSFVTFYTSTLL 81
>At1g58360.1 68414.m06638 amino acid permease I (AAP1) identical to
amino acid permease I GI:22641 from [Arabidopsis
thaliana]
Length = 485
Score = 30.3 bits (65), Expect = 1.0
Identities = 17/67 (25%), Positives = 31/67 (46%)
Frame = +2
Query: 212 DKPYNPFEHRNVQHPNTTLGSILHLLKSCLGSGILAMPAAFKNSGLVAGVIGTILAGFVC 391
D N E + T L + H++ + +GSG+L++ A G +AG ++ F+
Sbjct: 24 DPTKNVDEDGREKRTGTWLTASAHIITAVIGSGVLSLAWAIAQLGWIAGTSILLIFSFIT 83
Query: 392 THTVHIL 412
T +L
Sbjct: 84 YFTSTML 90
>At5g41800.1 68418.m05089 amino acid transporter family protein
similar to amino acid permease 1 [Nicotiana sylvestris]
GI:976402; belongs to INTERPRO:IPR002422 amino
acid/polyamine transporter, family II
Length = 452
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = +2
Query: 281 HLLKSCLGSGILAMPAAFKNSGLVAGVIGTILAGFVCTHTVHILVKTSQQICVEAKRPSL 460
HL + +G IL +P AF+ G G + G V + +++ K C ++ R +
Sbjct: 37 HLTTAIVGPTILTLPYAFRGLGWWLGFVCLTTMGLVTFYAYYLMSKVLDH-CEKSGRRHI 95
Query: 461 SFAE 472
F E
Sbjct: 96 RFRE 99
>At5g37010.1 68418.m04438 expressed protein
Length = 637
Score = 29.9 bits (64), Expect = 1.4
Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
Frame = +2
Query: 80 DKAIMEKNKSQSVKVDNFSSTIGLAANPGFQSTLSIASKGLPQD---DKPYNPFEHRNVQ 250
DKA+ N SVK +G AA+P QS AS+ P ++P+ +
Sbjct: 251 DKALSNNNGDGSVKRITVKRNVGKAASPRSQSPARAASQPSPSKLSRKTEHSPYRRNPLS 310
Query: 251 H--PNTTLGSILHLLKSCLGSGILAMPAAFKNSGLV 352
PN+ + K G+ I M +N GLV
Sbjct: 311 EIDPNSVAFPLSQGDKLGSGNNIRMMNRDNENQGLV 346
>At4g35180.1 68417.m05001 amino acid transporter family protein
similar to amino acid permease 1 GI:976402 from
[Nicotiana sylvestris]; contains Pfam profile PF01490:
Transmembrane amino acid transporter protein
Length = 456
Score = 29.9 bits (64), Expect = 1.4
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +2
Query: 281 HLLKSCLGSGILAMPAAFKNSGLVAGVIGTILAGFVC-THTVHILVKTSQQI 433
HLL S +G ++ +PAAF G V G I + GFV +T +LV+ + +
Sbjct: 46 HLLCSGIGLQVILLPAAFAALGWVWGTI-ILTVGFVWKLYTTWLLVQLHEAV 96
>At3g01760.1 68416.m00114 lysine and histidine specific transporter,
putative similar to lysine and histidine specific
transporter [Arabidopsis thaliana] GI:2576361; contains
Pfam profile PF01490: Transmembrane amino acid
transporter protein
Length = 479
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = +2
Query: 272 SILHLLKSCLGSGILAMPAAFKNSGLVAGVIGTILAGFVCTHTVHILVK 418
S H + + +G+G+L +P A G GV+ IL+ + +T+ +++
Sbjct: 63 SAFHNVTAIVGAGVLGLPYAMSELGWGPGVVVLILSWVITLYTLWQMIE 111
>At1g61270.1 68414.m06905 lysine and histidine specific transporter,
putative similar to lysine and histidine specific
transporter GI:2576361 from [Arabidopsis thaliana];
contains Pfam profile PF01490: Transmembrane amino acid
transporter protein
Length = 451
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = +2
Query: 272 SILHLLKSCLGSGILAMPAAFKNSGLVAGVIGTILAGFVCTHTVHILVKTSQQICVEAKR 451
S H + + +G+G+L +P A G GV+ IL+ + +T +++ + E KR
Sbjct: 41 SAFHNVTAIVGAGVLGLPYAMSELGWGPGVVVLILSWVITLYTFWQMIEMHEMF--EGKR 98
>At2g01730.1 68415.m00101 metallo-beta-lactamase family protein
simliar to SP|P79101 Cleavage and polyadenylation
specificity factor, 73 kDa subunit (CPSF 73 kDa subunit)
{Bos taurus}; contains Pfam profile PF00753:
Metallo-beta-lactamase superfamily
Length = 613
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +2
Query: 131 FSSTIGLAANPGFQSTLSIASKGLPQDDKPYNPFEHRNVQ 250
FSS + + AN ++ +S S+ + + +NPF+ +NV+
Sbjct: 266 FSSGLTIQANMYYKMLISWTSQNVKEKHNTHNPFDFKNVK 305
>At1g10650.1 68414.m01207 expressed protein
Length = 339
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -1
Query: 426 CDVFTKICTVCVQTK 382
CDVFTKIC VC K
Sbjct: 316 CDVFTKICPVCKSLK 330
>At5g63850.1 68418.m08015 amino acid transporter 4, putative (AAP4)
identical to amino acid transporter GI:608671 from
[Arabidopsis thaliana];
Length = 466
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +2
Query: 281 HLLKSCLGSGILAMPAAFKNSGLVAGVIGTILAGFVCTHTVHIL 412
H++ + +GSG+L++ A G +AG +L FV ++ +L
Sbjct: 29 HIITAVIGSGVLSLAWAIGQLGWIAGPTVMLLFSFVTYYSSTLL 72
>At2g43560.1 68415.m05412 immunophilin / FKBP-type peptidyl-prolyl
cis-trans isomerase family protein identical to Probable
FKBP-type peptidyl-prolyl cis-trans isomerase 2,
chloroplast precursor (Ppiase) (Rotamase)
(SP:O22870)[Arabidopsis thaliana]; contains Pfam
PF00254: peptidyl-prolyl cis-trans isomerase, FKBP-type
Length = 223
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Frame = +2
Query: 71 FVQDKAIMEKNKSQSVKVDNFSST-----IGLAANPGFQ-STLSIASKGLPQDDKP 220
++ + I + + QS K+ N SS + L + G S+L+ + GLP +DKP
Sbjct: 30 YIAARVIASETREQSCKISNLSSRREAMLLVLGVSGGLSMSSLAAYAAGLPPEDKP 85
>At5g41590.1 68418.m05053 hypothetical protein contains Pfam profile
PF04525: Protein of unknown function (DUF567)
Length = 221
Score = 27.9 bits (59), Expect = 5.5
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +2
Query: 44 KCKTLLNVNFVQDKAIME-KNKSQSVKVDNFSSTI-GLAANPGFQSTLSIA 190
+CK+ V+ +K ++E K K K F S + L NPGF + L++A
Sbjct: 161 RCKSCKIVHVPLNKTVVEIKRKEVRTKGVRFGSDVFDLVVNPGFDTGLAMA 211
>At5g15550.2 68418.m01821 transducin family protein / WD-40 repeat
family protein similar to YTM1 - Homo sapiens,
EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies,1 weak);
Length = 402
Score = 27.9 bits (59), Expect = 5.5
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 343 WSSRWCHWHYPSWFRLYTHCTYFGKNITANLR 438
W S C WH SWF L + +Y GK + +LR
Sbjct: 360 WISA-CKWHKSSWFHLLS-ASYDGKIMLWDLR 389
>At5g15550.1 68418.m01820 transducin family protein / WD-40 repeat
family protein similar to YTM1 - Homo sapiens,
EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies,1 weak);
Length = 433
Score = 27.9 bits (59), Expect = 5.5
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 343 WSSRWCHWHYPSWFRLYTHCTYFGKNITANLR 438
W S C WH SWF L + +Y GK + +LR
Sbjct: 360 WISA-CKWHKSSWFHLLS-ASYDGKIMLWDLR 389
>At3g59970.3 68416.m06695 methylenetetrahydrofolate reductase 1
(MTHFR1) identical to methylenetetrahydrofolate
reductase MTHFR1 [Arabidopsis thaliana] GI:5911425
Length = 592
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/53 (22%), Positives = 26/53 (49%)
Frame = -1
Query: 180 NVDWNPGLAASPIVEEKLSTLTDWLLFFSIMALSCTKFTFNKVLHLIKTSHYN 22
++ W G + + + E S + + + ++M L+CT K+ H ++T N
Sbjct: 50 DITWGAGGSTADLTLEIASRMQNVICVETMMHLTCTNMPIEKIDHALETIRSN 102
>At3g59970.2 68416.m06694 methylenetetrahydrofolate reductase 1
(MTHFR1) identical to methylenetetrahydrofolate
reductase MTHFR1 [Arabidopsis thaliana] GI:5911425
Length = 407
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/53 (22%), Positives = 26/53 (49%)
Frame = -1
Query: 180 NVDWNPGLAASPIVEEKLSTLTDWLLFFSIMALSCTKFTFNKVLHLIKTSHYN 22
++ W G + + + E S + + + ++M L+CT K+ H ++T N
Sbjct: 50 DITWGAGGSTADLTLEIASRMQNVICVETMMHLTCTNMPIEKIDHALETIRSN 102
>At3g59970.1 68416.m06693 methylenetetrahydrofolate reductase 1
(MTHFR1) identical to methylenetetrahydrofolate
reductase MTHFR1 [Arabidopsis thaliana] GI:5911425
Length = 421
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/53 (22%), Positives = 26/53 (49%)
Frame = -1
Query: 180 NVDWNPGLAASPIVEEKLSTLTDWLLFFSIMALSCTKFTFNKVLHLIKTSHYN 22
++ W G + + + E S + + + ++M L+CT K+ H ++T N
Sbjct: 50 DITWGAGGSTADLTLEIASRMQNVICVETMMHLTCTNMPIEKIDHALETIRSN 102
>At1g10010.1 68414.m01129 amino acid permease, putative similar to
amino acid permease I GI:22641 from [Arabidopsis
thaliana]; GC splice site at position 1256 is predicted
from alignment and not confirmed experimentally
Length = 475
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 281 HLLKSCLGSGILAMPAAFKNSGLVAGVIGTILAGF 385
H++ + +GSG+L++ A G VAG T+L F
Sbjct: 38 HIITAVIGSGVLSLAWAIAQLGWVAGT--TVLVAF 70
>At4g00200.1 68417.m00021 DNA-binding family protein contains a AT
hook motif (DNA binding motifs with a preference for A/T
rich regions), Pfam:PF02178
Length = 345
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +2
Query: 332 FKNSGLVAGVIGTILAGFVCTHTVHILVKTSQQICV-EAKRPSLS 463
F +SG GV G + G T H++ + ++C+ E K P LS
Sbjct: 102 FHSSGERFGVGGGVGGGVGSNFTPHVITVNTGEVCILEEKGPKLS 146
>At3g06530.1 68416.m00757 BAP28-related similar to Protein BAP28
(Swiss-Prot:Q9H583) [Homo sapiens]
Length = 1830
Score = 27.5 bits (58), Expect = 7.2
Identities = 17/70 (24%), Positives = 28/70 (40%)
Frame = +2
Query: 335 KNSGLVAGVIGTILAGFVCTHTVHILVKTSQQICVEAKRPSLSFAETCGAAFMYGPKRLR 514
+NS L + G +C VH++ T + V KR ++S E F G R
Sbjct: 1293 RNSWLNLDEVAVDSFGKMCEEIVHLINATDDESGVPVKRAAISTLEVLAGRFPSGHPIFR 1352
Query: 515 SWSGAIQKFV 544
A+ + +
Sbjct: 1353 KCLAAVAECI 1362
>At5g22200.1 68418.m02584 harpin-induced family protein / HIN1
family protein / harpin-responsive family protein
similar to harpin-induced protein hin1 ( GI:1619321)
[Nicotiana tabacum]
Length = 210
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -1
Query: 507 LLGPYIKAAPHVSAKLNEGLFA 442
L+G + AP++S+ LNE LFA
Sbjct: 129 LIGSAVPVAPYLSSALNEDLFA 150
>At5g09220.1 68418.m01045 amino acid permease 2 (AAP2) identical to
amine acid permease AAP2 [Arabidopsis thaliana]
GI:510236
Length = 493
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +2
Query: 281 HLLKSCLGSGILAMPAAFKNSGLVAGVIGTILAGFVCTHTVHIL 412
H++ + +GSG+L++ A G +AG +L V ++ +L
Sbjct: 56 HIITAVIGSGVLSLAWAIAQLGWIAGPAVMLLFSLVTLYSSTLL 99
>At3g23540.1 68416.m02962 expressed protein ; expression supported
by MPSS
Length = 568
Score = 27.1 bits (57), Expect = 9.6
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -2
Query: 404 VQCVYRRNQLG*CQ*HQRLDQNS*TQQASPVYQSQDRISGDEESTPMS 261
VQC+ R + R +Q+ +SPV +SQD++ ES P S
Sbjct: 461 VQCISSREEST----STRANQSETDSASSPVTRSQDQLPSSSESNPPS 504
>At3g02030.1 68416.m00166 hydrolase, alpha/beta fold family protein
contains Pfam profile PF00561: hydrolase, alpha/beta
fold family; contains non-consensus splice site (GC) at
intron 10
Length = 565
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 135 LRQLGSLPIQGSNLH*ALHQKVYL 206
LR +GS+PI G++LH L K ++
Sbjct: 478 LRMMGSVPISGTHLHNLLSAKSHI 501
>At2g44160.1 68415.m05493 methylenetetrahydrofolate reductase 2
(MTHFR2) identical to SP|O80585
Methylenetetrahydrofolate reductase (EC 1.5.1.20)
{Arabidopsis thaliana}
Length = 594
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/53 (22%), Positives = 26/53 (49%)
Frame = -1
Query: 180 NVDWNPGLAASPIVEEKLSTLTDWLLFFSIMALSCTKFTFNKVLHLIKTSHYN 22
++ W G + + + + S + + + S+M L+CT K+ H ++T N
Sbjct: 50 DITWGAGGSTADLTLDIASRMQNVVCVESMMHLTCTNMPVEKIDHALETIRSN 102
>At1g52430.1 68414.m05919 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1136
Score = 27.1 bits (57), Expect = 9.6
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +2
Query: 158 NPGFQSTLSIASKGLPQDDKPYNPFEHRNVQHPNTTLGSILHLLKSCLGSGILAMPAAFK 337
N + T + S G +D+ +PF ++ LGS+++ K CL LA+ F+
Sbjct: 65 NSDMEFTYLLGSVGCYSEDERLSPFCANSLHMLANKLGSLMY-YKKCLVKAKLALSVTFQ 123
Query: 338 N 340
+
Sbjct: 124 D 124
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,145,112
Number of Sequences: 28952
Number of extensions: 279753
Number of successful extensions: 827
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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