Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11j10r
         (740 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    25   0.85 
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    23   2.6  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   2.6  
EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine vasopre...    22   6.0  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 403 TSRSPAFSESKRFVPIASSSSMKMIAGAFSLANAKASRT 519
           TS +PAFSE +  V     +S   +   F L+   A R+
Sbjct: 11  TSSAPAFSEQRGGVISEGVASSLQVVALFQLSETTAPRS 49


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 94  RSAIIPASTQTALHWAP 144
           R  I+ AST  AL WAP
Sbjct: 148 RILIVKASTAQALGWAP 164


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 187 SGLTFILREWICIILAR 237
           SGL +I   WIC ++ R
Sbjct: 727 SGLVYIATVWICTLMNR 743


>EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine
           vasopressin-like peptide protein.
          Length = 146

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +1

Query: 505 KASRTSLAPSPMNICTSCGP 564
           K S+ +++ + +  C SCGP
Sbjct: 31  KRSKFAISENAVKPCVSCGP 50


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,029
Number of Sequences: 336
Number of extensions: 4166
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19884055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)