Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11j10r
         (740 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    25   0.99 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    25   0.99 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.3  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    24   1.7  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    24   1.7  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   5.3  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   5.3  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 24.6 bits (51), Expect = 0.99
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 635 EVHIKELLWVGGCRDSQISPC 697
           ++  +EL+W  G +D  IS C
Sbjct: 429 DIRTEELIWARGTKDIPISAC 449


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 24.6 bits (51), Expect = 0.99
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 635 EVHIKELLWVGGCRDSQISPC 697
           ++  +EL+W  G +D  IS C
Sbjct: 519 DIRTEELIWARGTKDIPISAC 539


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 271  RSKRPDLSRAGSKMSTLLVAAMTLMSAVELNPSSWFNNSN 390
            RS RP+LS A   + +L    + L S++   PS+  N S+
Sbjct: 1878 RSDRPELSEAECDIDSLKKLKLGLRSSLWSRPSTQNNPSS 1917


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 271  RSKRPDLSRAGSKMSTLLVAAMTLMSAVELNPSSWFNNSN 390
            RS RP+LS A   + +L    + L S++   PS+  N S+
Sbjct: 1874 RSDRPELSEAECDIDSLKKLKLGLRSSLWSRPSTQNNPSS 1913


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 501 CKGVADKLGTITNEHLHKLWTSQLQKCRLCLSSASSRQQCL 623
           C+ VA +L    N  L + +   LQ+C L L     R  CL
Sbjct: 413 CEKVAKQLVNSVN-CLRESFIGTLQRCLLSLEKTYERDTCL 452


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 501 CKGVADKLGTITNEHLHKLWTSQLQKCRLCLSSASSRQQCL 623
           C+ VA +L    N  L + +   LQ+C L L     R  CL
Sbjct: 451 CEKVAKQLVNSVN-CLRESFIGTLQRCLLSLEKTYERDTCL 490


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 240 FFIGMRKFDFSVQTSRSEQGRVQNVHSIGS 329
           FF+ +  F +    SRSE+    NV+S G+
Sbjct: 434 FFLAINVFYWFAYLSRSERINYYNVNSNGT 463


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 230 WLGLLHWDEEIRFFG 274
           W+G+LH DE    FG
Sbjct: 491 WMGVLHGDEVEYVFG 505


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,547
Number of Sequences: 438
Number of extensions: 5173
Number of successful extensions: 18
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)