Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11j10f
(597 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5903| Best HMM Match : No HMM Matches (HMM E-Value=.) 235 1e-62
SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.025
SB_20161| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.057
SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14) 34 0.076
SB_12331| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_320| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_15301| Best HMM Match : Kelch_1 (HMM E-Value=0) 32 0.31
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27) 32 0.40
SB_53556| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.93
SB_21400| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.93
SB_13696| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.93
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_52106| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0098) 29 2.2
SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31) 29 2.9
SB_53343| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_35649| Best HMM Match : M (HMM E-Value=6e-09) 29 2.9
SB_21874| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_36974| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_22161| Best HMM Match : Vicilin_N (HMM E-Value=0.11) 29 3.8
SB_33833| Best HMM Match : DUF947 (HMM E-Value=0.2) 29 3.8
SB_11401| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_41890| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_11868| Best HMM Match : zf-CHC2 (HMM E-Value=0.64) 28 5.0
SB_10355| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0037) 28 5.0
SB_48789| Best HMM Match : M (HMM E-Value=1.3e-10) 28 5.0
SB_46136| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_56573| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_41319| Best HMM Match : NACHT (HMM E-Value=5.2e-14) 28 6.6
SB_32475| Best HMM Match : IWS1_C (HMM E-Value=0) 28 6.6
SB_29265| Best HMM Match : OmpH (HMM E-Value=3) 28 6.6
SB_4879| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_38518| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_37864| Best HMM Match : Extensin_2 (HMM E-Value=0.064) 27 8.7
SB_27802| Best HMM Match : Filament (HMM E-Value=0.2) 27 8.7
SB_45719| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_18003| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_7056| Best HMM Match : Seryl_tRNA_N (HMM E-Value=8.1) 27 8.7
SB_4536| Best HMM Match : Krr1 (HMM E-Value=4) 27 8.7
SB_3154| Best HMM Match : DUF812 (HMM E-Value=1.8) 27 8.7
>SB_5903| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 346
Score = 235 bits (576), Expect = 1e-62
Identities = 129/169 (76%), Positives = 135/169 (79%), Gaps = 1/169 (0%)
Frame = +2
Query: 92 MATTLEDKSIWEDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQND 271
MA TLEDK+IW DGEE + EEVLRM TDEIVSR RLLDNEI
Sbjct: 1 MAATLEDKAIWGDGEE-MGEEVLRMSTDEIVSRARLLDNEI------------------- 40
Query: 272 KIKENTEKIKVNKTLPYLVSNVIELLDVDPQE-EEEDGAVVDLDSQRKGKCAVIKTSTRQ 448
KEN+EKIKVNKTLPYLVSNVIELLDVDPQ+ EEDGA VDLDSQRKGKCAVIKTSTRQ
Sbjct: 41 --KENSEKIKVNKTLPYLVSNVIELLDVDPQDYAEEDGANVDLDSQRKGKCAVIKTSTRQ 98
Query: 449 TYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPAEYDARVKAMEVDE 595
TYFLPVIGLV+ E L PGDLVGVNKDSYLILE LPAEYD+RVKAMEVDE
Sbjct: 99 TYFLPVIGLVEPENLTPGDLVGVNKDSYLILEKLPAEYDSRVKAMEVDE 147
>SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3212
Score = 35.9 bits (79), Expect = 0.025
Identities = 30/128 (23%), Positives = 60/128 (46%), Gaps = 2/128 (1%)
Frame = +2
Query: 68 EKTNHNITMATTLEDKSIWEDGEEALSEEVLRMPTDEIVSRTRLLDNEIKI--MKSEVMR 241
+K+ I + L D W+D +L EV ++ D+ + +++D+E ++ ++S + +
Sbjct: 2590 DKSTATIHLEVELSD---WKDQASSLQSEVAQLKKDKAAAMHKVIDSEEQMIQLRSRLYK 2646
Query: 242 ISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIELLDVDPQEEEEDGAVVDLDSQRKGKC 421
L D +K + K N L + + L V E ++ +VD + + K KC
Sbjct: 2647 TEDSLVRNQDTVKLLS---KENTDLRVEIERLRSRLSVYASETAKE--IVDGNGEGKAKC 2701
Query: 422 AVIKTSTR 445
V+ T T+
Sbjct: 2702 GVV-TKTK 2708
>SB_20161| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 475
Score = 34.7 bits (76), Expect = 0.057
Identities = 20/84 (23%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Frame = +2
Query: 173 DEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNK-TLPYLVSNVIELL 349
+ + S R +NEI +K+ + R+ EL++ +++ ++EKI ++ + L ++ +
Sbjct: 105 ESVTSELRGRENEIAELKTSIGRLESELRSLKSELQNSSEKISEDEHEISQLKNDKARCM 164
Query: 350 -DVDPQEEEEDGAVVDLDSQRKGK 418
++ + E+ + VVDL RK +
Sbjct: 165 QELRDEREKSNKLVVDLQKTRKAQ 188
>SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14)
Length = 1197
Score = 34.3 bits (75), Expect = 0.076
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 4/100 (4%)
Frame = +2
Query: 110 DKSIWEDGEEALSEEVLRMPT--DEIVSRTRLLDNEIKIMKSE--VMRISHELQAQNDKI 277
D+ WE+ ++ L M T DE + + E K E + + ++ AQ +I
Sbjct: 391 DREEWEEEQKRLDRAWYDMDTGYDETQNPFADVSEEYTKKKEEKLIKKAVKKMSAQQRQI 450
Query: 278 KENTEKIKVNKTLPYLVSNVIELLDVDPQEEEEDGAVVDL 397
++ + + N+ L S V++ LDVD EEE+ A V L
Sbjct: 451 NKDNDMWETNRML---TSGVVQKLDVDEDFEEENEAKVHL 487
>SB_12331| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 748
Score = 33.1 bits (72), Expect = 0.18
Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 3/115 (2%)
Frame = +2
Query: 77 NHNITMATTLEDKSIWEDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHEL 256
N NIT E I +DG+E E++ PT + +L DN ++ E +L
Sbjct: 585 NMNITFKAHREVNRIEQDGQEVQEEQLEDNPTVPLGQEEQLEDNPTVPLEQE-----EQL 639
Query: 257 QAQNDKIKENTEKIKVNKTLPYLVSNVIE---LLDVDPQEEEEDGAVVDLDSQRK 412
+ E ++++ N T+P +E + ++ +E+ ED V L+ + +
Sbjct: 640 EDNPTVPLEQEQQLEDNPTVPLEQEEQLEDNPTVPLEQEEQLEDNPTVPLEQEEQ 694
>SB_320| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1040
Score = 33.1 bits (72), Expect = 0.18
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +2
Query: 230 EVMRISHELQAQNDKIKENTEKIK-VNKTLPYLVSNVIELLD 352
E+ + +EL+ Q + IKEN EK+K K + L +IEL D
Sbjct: 612 EITELENELEEQREIIKENEEKLKEKEKEIEKLKKKIIELSD 653
>SB_15301| Best HMM Match : Kelch_1 (HMM E-Value=0)
Length = 590
Score = 32.3 bits (70), Expect = 0.31
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Frame = +2
Query: 200 LDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVI---ELLDVDPQ 364
++NE K+ ++ V ++H+L + D E E I++ PY + +V+ EL+ V P+
Sbjct: 191 VENEEKVYEALVRWVNHDLSQRRDLFPELLELIRLPLVSPYYLVDVVEKEELMTVSPR 248
>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
Length = 5087
Score = 31.9 bits (69), Expect = 0.40
Identities = 25/107 (23%), Positives = 54/107 (50%), Gaps = 2/107 (1%)
Frame = +2
Query: 104 LEDKSIWEDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKE 283
+ ++ + E+ E EE +++ + + E+++M + + HE + +++IKE
Sbjct: 2909 ISEEELLEEVEVQRVEEGASHDLEDVPALKESYEEEVEVM---AVGLKHEERVNDEEIKE 2965
Query: 284 NTEKIKVNKTLPYLVSNVIELLDVDPQEEEEDGAVVDL--DSQRKGK 418
EKI +++ N+I+ L+ +EE E AV + +R+GK
Sbjct: 2966 KDEKIHLDE------ENIIQDLEETFEEELEVSAVETSKNEDERRGK 3006
>SB_53556| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1524
Score = 30.7 bits (66), Expect = 0.93
Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
Frame = +2
Query: 125 EDGEEALSEEVL--RMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKI 298
EDG E L E++ R E+ R + L+ E +++ +V + ++ + KIK+ EK+
Sbjct: 408 EDGTE-LEEKIRSQRNRITELERRVKELEKEKNLLEQQVKTMKNKSDDDDKKIKDLNEKV 466
Query: 299 KVNKTLPYLVSNVIELLDVDPQEEEEDGAVVDLDSQRK 412
+V + L N E+ + E + + DL + K
Sbjct: 467 RVLE--KQLKENDAEIQGLKDDNERLEDELEDLSTTIK 502
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +2
Query: 173 DEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIELLD 352
DE++ + L ++ ++ EV ++ EL+ + ++TEK+ N + ++EL
Sbjct: 716 DELMKQNESLRKKVSKLEDEVRFLNDELREADSSSIKDTEKL--NAEIREFKKKIVELEK 773
Query: 353 -VDPQEEE 373
VD QEEE
Sbjct: 774 LVDDQEEE 781
>SB_21400| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1531
Score = 30.7 bits (66), Expect = 0.93
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 9/109 (8%)
Frame = +2
Query: 149 EEVLRMPTDEIVSR---TRLLDNEIKIMKSEVMRISHELQAQND------KIKENTEKIK 301
EE LR +E+ R LDNE+ ++++ +L+ D ++ E E+ K
Sbjct: 909 EEKLRRTEEELKDRDGQVAKLDNELTKLQNDFQDTITQLKTLEDLLDTSKRVVEEKEQ-K 967
Query: 302 VNKTLPYLVSNVIELLDVDPQEEEEDGAVVDLDSQRKGKCAVIKTSTRQ 448
V + L +V EL D +E+DG + +LD K IK Q
Sbjct: 968 VTELDKLLNESVDELQQKDKSLKEKDGKLAELDQALKESRKEIKNREAQ 1016
>SB_13696| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 676
Score = 30.7 bits (66), Expect = 0.93
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +2
Query: 101 TLEDKSIWEDGEEALSEEVLRMPTDEIVSRTR-LLDNEIKIMKSEVMRISHELQAQNDKI 277
TL+D+ W + E + + + DE++S R + I I V I ++A
Sbjct: 502 TLDDEQGWVEPEPEVDAKRSCLKDDELLSMVRNIKAAHITITGEPVPEIEERMRAMTTAS 561
Query: 278 KENTEKIKVN 307
EN E +K+N
Sbjct: 562 NENKELVKLN 571
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +2
Query: 272 KIKENTEKIKVNKTLPYLVSNVIELLDVDPQEEEEDGAVVDLDSQR 409
K+K ++ + NKT + N +E D +P+E EED V D++R
Sbjct: 510 KLKSKMKRSEKNKTEELVAVNKVETDDDNPEETEEDSGNVS-DTER 554
>SB_52106| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0098)
Length = 1177
Score = 29.5 bits (63), Expect = 2.2
Identities = 23/91 (25%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Frame = +2
Query: 35 VQELLNLKDYYEKTNHNIT--MATTLEDKSIWEDGEEALSEEVLRMPTDEIVSRTRLLDN 208
++E L + +E T +++ +AT ++ K + EAL L+ ++ + L
Sbjct: 185 LEEQLKAETQHESTLRDLSSQLATAVQQK----EELEALRARELKANREDYQKKCESLMV 240
Query: 209 EIKIMKSEVMRISHELQAQNDKIKENTEKIK 301
EI+ +KSEV +++ LQ Q D+++ + +K
Sbjct: 241 EIESLKSEVQQLNSRLQNQ-DELETERKTLK 270
>SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)
Length = 2122
Score = 29.1 bits (62), Expect = 2.9
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 14/94 (14%)
Frame = +2
Query: 47 LNLKDYYEKTNHNITM-----ATTLEDKSIWED---GEEALSE---EVLRM---PTDEIV 184
LN KDY ++ N T+ LE+K + G + ++E E+ +M PT+ +
Sbjct: 1593 LNNKDYIQQRTDNQTLRQENETVLLENKDLKAQIAAGLKKMAEYEREITKMGQRPTEVVK 1652
Query: 185 SRTRLLDNEIKIMKSEVMRISHELQAQNDKIKEN 286
R R D+EI+ E+ + EL+ Q ++EN
Sbjct: 1653 RRGRRGDSEIQRENIELQKRIAELEIQRKSVEEN 1686
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = +2
Query: 56 KDYYEKTNHNITMATTLEDKS--IWEDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKS 229
+D YEK N + M +++ I + A + +L+ +E + + EIK ++S
Sbjct: 1193 EDLYEKENEVVVMKKRVKEFELLISNSNDSAAKDSLLKTVKNE----NEIQEKEIKKLRS 1248
Query: 230 EVMRISHELQAQNDK 274
EV+ + E K
Sbjct: 1249 EVLELQREASGAQGK 1263
>SB_53343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 779
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +2
Query: 134 EEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEK 295
+ A+ E++ D VS R+ +NE+++ KSE + +Q K + E+
Sbjct: 121 QTAIQLEIVNFNDDSFVSGNRMSNNEVRVTKSESLSSPSNSYSQAFKSNNSREE 174
>SB_35649| Best HMM Match : M (HMM E-Value=6e-09)
Length = 1279
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Frame = +2
Query: 101 TLEDKSIWED---GEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQND 271
+LE+K +D E S E DE+V R L +E+K +K E + ++++ N
Sbjct: 682 SLEEKIRLKDVVIDELKTSLETCSKERDELVESNRNLGSELKALKKENEELVSQVESLNQ 741
Query: 272 KIKE 283
K+++
Sbjct: 742 KVEQ 745
>SB_21874| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 608
Score = 29.1 bits (62), Expect = 2.9
Identities = 23/86 (26%), Positives = 38/86 (44%)
Frame = +2
Query: 56 KDYYEKTNHNITMATTLEDKSIWEDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEV 235
K+ +KT N T E+K ++ ++ E + T E +T+ ++ K K +
Sbjct: 458 KENKDKTKEN--KDKTKENKDKTKENKDKTKEN--KDKTKENKDKTKNNKDKTKENKDKT 513
Query: 236 MRISHELQAQNDKIKENTEKIKVNKT 313
+ + DK KEN K K NKT
Sbjct: 514 NENKDKTKENKDKTKENKNKTKENKT 539
>SB_36974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 634
Score = 28.7 bits (61), Expect = 3.8
Identities = 9/18 (50%), Positives = 16/18 (88%)
Frame = +2
Query: 341 ELLDVDPQEEEEDGAVVD 394
+++D+ PQ+EEEDG V++
Sbjct: 527 DIVDLQPQDEEEDGEVIE 544
>SB_22161| Best HMM Match : Vicilin_N (HMM E-Value=0.11)
Length = 489
Score = 28.7 bits (61), Expect = 3.8
Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 1/136 (0%)
Frame = +2
Query: 65 YEKTNHNITMATTLEDKSIWEDGEEALSEEV-LRMPTDEIVSRTRLLDNEIKIMKSEVMR 241
Y++ ++ + LE K W + EEA + V L+ ++ + E M+ ++
Sbjct: 51 YKERERHMEIVQLLEKKRPWAEYEEARKQFVDLKTKREDAKKQLDQCRRENAPMEQQLNA 110
Query: 242 ISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIELLDVDPQEEEEDGAVVDLDSQRKGKC 421
I L + +K+ EK S+ +E L VD EE+++ + D+ + K +
Sbjct: 111 IVQHLCQLDRNMKQQAEKGSETHRKAKAKSDQLEAL-VDKIEEQQN-HLKDMQDEEKRRH 168
Query: 422 AVIKTSTRQTYFLPVI 469
T + F P I
Sbjct: 169 KNFSTLIGKLLFQPKI 184
>SB_33833| Best HMM Match : DUF947 (HMM E-Value=0.2)
Length = 1106
Score = 28.7 bits (61), Expect = 3.8
Identities = 9/18 (50%), Positives = 16/18 (88%)
Frame = +2
Query: 341 ELLDVDPQEEEEDGAVVD 394
+++D+ PQ+EEEDG V++
Sbjct: 982 DIVDLQPQDEEEDGEVIE 999
>SB_11401| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 439
Score = 28.7 bits (61), Expect = 3.8
Identities = 9/18 (50%), Positives = 16/18 (88%)
Frame = +2
Query: 341 ELLDVDPQEEEEDGAVVD 394
+++D+ PQ+EEEDG V++
Sbjct: 22 DIVDLQPQDEEEDGEVIE 39
>SB_41890| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 188
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +2
Query: 203 DNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIE 343
D +K + SE ++ EL Q DKI KIK+ P + ++IE
Sbjct: 104 DQPMKKLGSEFETVTGELLTQLDKISRGVRKIKLVSGDPRDIQSLIE 150
>SB_11868| Best HMM Match : zf-CHC2 (HMM E-Value=0.64)
Length = 500
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/69 (24%), Positives = 30/69 (43%)
Frame = +2
Query: 113 KSIWEDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTE 292
KS+ + G+ + DE+ R L+ E+K +KSE + Q N ++
Sbjct: 224 KSLKKGGDLLFPGASYKRKLDEVAGRLDELEREVKRLKSETCQTKMTCQPCNHQLLMVGP 283
Query: 293 KIKVNKTLP 319
+ + TLP
Sbjct: 284 TVPIPPTLP 292
>SB_10355| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0037)
Length = 1127
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +2
Query: 125 EDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKI 277
++ E L + LR E S+ + LD+E+ + + ++ HELQ + +I
Sbjct: 910 QEAEFELKLDDLRADIQERDSQIKELDSEMAEVTENIAKLQHELQGKGQEI 960
>SB_48789| Best HMM Match : M (HMM E-Value=1.3e-10)
Length = 2478
Score = 28.3 bits (60), Expect = 5.0
Identities = 32/145 (22%), Positives = 58/145 (40%), Gaps = 9/145 (6%)
Frame = +2
Query: 44 LLNLKDYYEKTNHN-ITMATTLEDKSIWEDGEEALSEEVLRMPTDEIVSRTRLLDNEIKI 220
L+NL+ K + T LE + E L++ L M + + L+N ++
Sbjct: 791 LVNLQSLQNKLERSEFETRTRLEGQVEALQKESNLAKRQLEMDNTHHKNLIKTLENRVQE 850
Query: 221 MKSEVMRISHELQAQNDKIKENTEKI--------KVNKTLPYLVSNVIELLDVDPQEEEE 376
+++++ S Q D + NT+++ +V L V ELL +P ++
Sbjct: 851 LQTQIDTESRSNQQARDMLVRNTKEMERLEFKNTEVKAQLEAAEKRVHELLSKEPSSDQ- 909
Query: 377 DGAVVDLDSQRKGKCAVIKTSTRQT 451
D+D RK KT + T
Sbjct: 910 -----DIDKMRKETEEKFKTDLQDT 929
>SB_46136| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 164
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +2
Query: 164 MPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDK-IKENTEKIKVNKTLPYLVSNVI 340
M TD+ L+ ++ M SE++R+ + A++DK ++ E I+ L+ ++
Sbjct: 76 METDQANQSVSDLEGIVQSMGSEILRLQSLVSAEDDKMLRYKVENIRRKHNYIPLIMEML 135
Query: 341 ELL 349
+LL
Sbjct: 136 KLL 138
>SB_56573| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 641
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = +2
Query: 119 IWEDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHEL 256
I E +E ++ R+ EI+S+T +L ++IK + VMRI E+
Sbjct: 196 IIEGKKEFKLADLGRVTLKEIISKTSVLVSDIKGSRESVMRIPMEI 241
>SB_41319| Best HMM Match : NACHT (HMM E-Value=5.2e-14)
Length = 961
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +2
Query: 170 TDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVN 307
T+++V + +EI I E ++ HE++ + +I TEK+ V+
Sbjct: 376 TNKVVHEVKGKVSEISIKTDETNKVVHEVKGKVSEISIKTEKMAVD 421
>SB_32475| Best HMM Match : IWS1_C (HMM E-Value=0)
Length = 768
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 281 ENTEKIKVNKTLPYLVSNVIELLDVDPQEEEEDGA 385
E ++ + ++T P N +E V P+ EEEDGA
Sbjct: 56 EGEKEDEASETSPRGSENSVESRSVSPKNEEEDGA 90
>SB_29265| Best HMM Match : OmpH (HMM E-Value=3)
Length = 218
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = +2
Query: 344 LLDVDPQEEE--EDGAVVDLDSQ--RKGKCAVIKTSTRQTYFLPVIGLVD 481
L D D E E +D VD++++ KGK K+S + Y PV+ L D
Sbjct: 25 LCDTDAPEAEVVDDEPEVDVETETEEKGKAETKKSSEPEEYTPPVVALED 74
>SB_4879| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 607
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +2
Query: 50 NLKDYYEKTNHNITMATTLEDKSIWEDGEEALSEEVLR 163
N + YE N + M + L+D E GEE EEV R
Sbjct: 391 NNNNNYESDNSDTNMISDLDDDDDDESGEEEEEEEVNR 428
>SB_38518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1399
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Frame = +2
Query: 347 LDVDPQEEEEDGAVVDLDSQRKGKCAVIKTS-TRQTY 454
+D P+E + DGAVV++ S +G V ++S +RQ+Y
Sbjct: 477 MDEVPEEMDSDGAVVNIQSAMRGH--VTRSSLSRQSY 511
>SB_37864| Best HMM Match : Extensin_2 (HMM E-Value=0.064)
Length = 1230
Score = 27.5 bits (58), Expect = 8.7
Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Frame = +2
Query: 263 QNDKIKENTEKIKVNKTLPYLVSNVIELLDVDPQEEEEDGAVVDLDSQRKGKCAVIKTS- 439
Q+DK+ + K++ + +++++ + + +DP EE +L S K + + K
Sbjct: 313 QDDKVAQAKAKLQHAEKASDVLTSMEKEMGLDPSTAEEK--TKNLTSVLKDEMSKFKDLI 370
Query: 440 TRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPAEYDARVKAME 586
+Q + EKL D+ G N LI+E A+Y A+ +A +
Sbjct: 371 NKQDDSVKKEKFEKLEKLAEEDVKGTNDVMKLIVELEVAKYFAKQRARQ 419
>SB_27802| Best HMM Match : Filament (HMM E-Value=0.2)
Length = 528
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/51 (23%), Positives = 29/51 (56%)
Frame = +2
Query: 149 EEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIK 301
E+ + +EI+ + IK+ + + R+ HE+Q +ND + ++ +++K
Sbjct: 114 EDEIAQEKEEILELKNKHSDSIKLAE-DTNRLLHEVQRKNDSLAKDMKRVK 163
>SB_45719| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 429
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/34 (38%), Positives = 24/34 (70%), Gaps = 3/34 (8%)
Frame = +2
Query: 203 DNEIKIMKSEVMRISHELQ---AQNDKIKENTEK 295
D++I+++KSE+ + S E+Q AQ D++K +K
Sbjct: 274 DDQIQMLKSELEKASTEMQGIAAQVDEVKSQADK 307
>SB_18003| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 531
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/53 (22%), Positives = 26/53 (49%)
Frame = +2
Query: 125 EDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKE 283
+ E+ + R P D V ++++ E+K+ K+ + H ++ D+ KE
Sbjct: 309 QKSEKEVDASSERAPKDNKVRKSKIKTEELKVPKALEREVGHAKTSKKDESKE 361
>SB_7056| Best HMM Match : Seryl_tRNA_N (HMM E-Value=8.1)
Length = 94
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Frame = +2
Query: 200 LDNEIK----IMKSEVMRISHELQAQNDKIKENTEKIK 301
LD E++ +M E R++ ELQAQ DK+ ++++
Sbjct: 22 LDKELEWRRDVMNKEYTRLASELQAQEDKVLNMKQQVQ 59
>SB_4536| Best HMM Match : Krr1 (HMM E-Value=4)
Length = 246
Score = 27.5 bits (58), Expect = 8.7
Identities = 20/75 (26%), Positives = 39/75 (52%)
Frame = +2
Query: 188 RTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIELLDVDPQE 367
R R L+ ++ MK E +A+ K+ ++ K V+ +P+ N++ELL DP++
Sbjct: 93 RKRQLNILLEKMKGERSLRQQLNKARKSKMLKSRSKRLVDLGVPH---NLLELLPEDPED 149
Query: 368 EEEDGAVVDLDSQRK 412
+ +V+L R+
Sbjct: 150 AMPEEIIVELGRIRE 164
>SB_3154| Best HMM Match : DUF812 (HMM E-Value=1.8)
Length = 815
Score = 27.5 bits (58), Expect = 8.7
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Frame = +2
Query: 107 EDKSIWEDGEEALSEEVLRMPTD------EIVSRTRLLDNEIKIMKSEVMRISHELQAQN 268
+DK I E+ + +EV + D E+V+R RL D E+ ++ + EL N
Sbjct: 618 KDKYIQEELRQLSDKEVYKETKDLTQYITELVNR-RLSDKEVYKETKDLTQYITELV--N 674
Query: 269 DKIKENTEKIKVNKTLPYLVSNVIEL 346
++++ + ++KTL YL+ NV ++
Sbjct: 675 RRVRKLSADGFIDKTLDYLIINVRDM 700
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,019,596
Number of Sequences: 59808
Number of extensions: 272939
Number of successful extensions: 954
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -