Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11j09f
(511 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29) 37 0.011
SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_14604| Best HMM Match : PT (HMM E-Value=5.1) 29 2.2
SB_4263| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.9
SB_31412| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.9
SB_45977| Best HMM Match : MBT (HMM E-Value=0) 28 5.1
SB_12646| Best HMM Match : SSrecog (HMM E-Value=0) 27 6.8
SB_56925| Best HMM Match : RVP (HMM E-Value=2.3) 27 9.0
SB_56215| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
SB_48266| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
SB_44556| Best HMM Match : RVP (HMM E-Value=2.3) 27 9.0
SB_38556| Best HMM Match : RVP (HMM E-Value=1.4) 27 9.0
SB_23813| Best HMM Match : RVT_1 (HMM E-Value=0.00037) 27 9.0
SB_8085| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
SB_7574| Best HMM Match : RVP (HMM E-Value=2.3) 27 9.0
SB_43706| Best HMM Match : RVP (HMM E-Value=1.4) 27 9.0
SB_22574| Best HMM Match : RVP (HMM E-Value=1.4) 27 9.0
SB_20170| Best HMM Match : RVT_1 (HMM E-Value=0.00014) 27 9.0
SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
SB_1949| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
>SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29)
Length = 1544
Score = 36.7 bits (81), Expect = 0.011
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Frame = -2
Query: 507 DVTDNDVVCEGDGSGSLS-NDVLKGKSSGSERPQDAAENADFSFSGTD*C*NSGNSQD*V 331
DV+D D V +GD G+ + +DV G S G + +++ D S +G + N N D V
Sbjct: 166 DVSDGDDVSDGDVDGANNCDDVSNGASDGDDVSNGSSDGDDVS-NGANDVSNGANDGDDV 224
Query: 330 ESGADVADTTQMQGAEVISLDVSHAAREVNDV 235
+ A+ D GA DVS+ A + +DV
Sbjct: 225 SNVANDGDDVS-NGAN-DGDDVSNGANDCDDV 254
>SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4475
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +1
Query: 106 PNSQRILDIVISN--LFNEIGELLRAADPLRRDGY 204
P SQRIL +++ LFN+ L AA+ L R GY
Sbjct: 3158 PGSQRILVVIMGGPQLFNQKRPLSTAAEQLHRHGY 3192
>SB_14604| Best HMM Match : PT (HMM E-Value=5.1)
Length = 344
Score = 29.1 bits (62), Expect = 2.2
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Frame = -3
Query: 425 EAKDLRTRLKMRISPSAEPTD-AETLGTARTKLSRVPT*LTRRK----CRELKSSALTSV 261
+A LRT+ K + PS P D A TLGT + R T T+ + + A T
Sbjct: 141 QATTLRTKPKPSV-PSHNPGDQATTLGTNKNPRDRAKTLGTKPQPWGPSHNPQDQAKTLG 199
Query: 260 TRPEKLMMSDAPGGLQEPA*PSR 192
T+P+ S P Q+P+ PS+
Sbjct: 200 TKPQPWGPSHNPRDQQKPSGPSQ 222
>SB_4263| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1586
Score = 28.3 bits (60), Expect = 3.9
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 7/74 (9%)
Frame = +1
Query: 268 VKADDFSSLHLRRVSYVGTRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFAS 426
V D ++ ++ R+S TRL N+ + VS + GS++ GE R+ F+R +SF+
Sbjct: 372 VTVDSGATGNMIRLS-TATRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSF 430
Query: 427 GGLALENVVAEATA 468
GL +EN+ E A
Sbjct: 431 EGLVVENLDVEVLA 444
>SB_31412| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 909
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +1
Query: 31 TMKAFIFALALACVSAVPHRDVDFEPNSQRILDIVISNLF 150
T ++ A++ AC A+ H+D D+ P+ I+ +IS +F
Sbjct: 831 TERSVFSAMSTACKQAIFHQDHDYYPSIFIIIIAIISLIF 870
>SB_45977| Best HMM Match : MBT (HMM E-Value=0)
Length = 1198
Score = 27.9 bits (59), Expect = 5.1
Identities = 17/85 (20%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Frame = -3
Query: 479 RETEAVASATTFSRASP--PEAKDLRTRLKMRISPSAEPTDAETLGTARTKLSRVPT*LT 306
++T++ +S T R P P + D +++L A PT + ++ T +S T ++
Sbjct: 983 QQTKSPSSYPTVIRPKPSLPYSHDFKSKLSSPYHSEARPTSSSSVQTGEKTISSHITGVS 1042
Query: 305 RRKCRELKSSALTSVTRPEKLMMSD 231
+ + ++ ++ T P + D
Sbjct: 1043 TAQITSMSTTTESTTTHPVRRTSRD 1067
>SB_12646| Best HMM Match : SSrecog (HMM E-Value=0)
Length = 783
Score = 27.5 bits (58), Expect = 6.8
Identities = 22/67 (32%), Positives = 29/67 (43%)
Frame = +1
Query: 250 SGRVTDVKADDFSSLHLRRVSYVGTRLNLVLAVPRVSASVGSAEGEIRIFSRVLRSFASG 429
+GRV DD S H RV+ G L +VL G E + S L+SF
Sbjct: 38 TGRVDQFSKDDIESAHWLRVA-CGQELKIVLKSGLQFRFDGFKESDFANLSEFLKSFF-- 94
Query: 430 GLALENV 450
G+ LE +
Sbjct: 95 GVKLEEM 101
>SB_56925| Best HMM Match : RVP (HMM E-Value=2.3)
Length = 226
Score = 27.1 bits (57), Expect = 9.0
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 7/56 (12%)
Frame = +1
Query: 322 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATA 468
TRL N+ + VS + GS++ GE R+ F+R +SF+ GL +EN+ E A
Sbjct: 160 TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLA 215
>SB_56215| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1505
Score = 27.1 bits (57), Expect = 9.0
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 7/56 (12%)
Frame = +1
Query: 322 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATA 468
TRL N+ + VS + GS++ GE R+ F+R +SF+ GL +EN+ E A
Sbjct: 331 TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLA 386
>SB_48266| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 723
Score = 27.1 bits (57), Expect = 9.0
Identities = 31/115 (26%), Positives = 45/115 (39%)
Frame = +1
Query: 148 FNEIGELLRAADPLRRDGYAGSWSPPGASDIINFSGRVTDVKADDFSSLHLRRVSYVGTR 327
FN GE++ R D +GS +S + G V D D SS R S +
Sbjct: 397 FNSPGEMMLGRLRARLDSTSGSVCSRRSSSFVGMFGVVADDNYRDVSSYRSRLGSDTISN 456
Query: 328 LNLVLAVPRVSASVGSAEGEIRIFSRVLRSFASGGLALENVVAEATASVSLADNI 492
++L R S+ GS I SR SF G + + A A S++ +
Sbjct: 457 IDLSAVGNRRSSRQGS------IISRRSSSFGRKGSRPSCLCSVAGAQGSISSRL 505
>SB_44556| Best HMM Match : RVP (HMM E-Value=2.3)
Length = 305
Score = 27.1 bits (57), Expect = 9.0
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 7/56 (12%)
Frame = +1
Query: 322 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATA 468
TRL N+ + VS + GS++ GE R+ F+R +SF+ GL +EN+ E A
Sbjct: 239 TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLA 294
>SB_38556| Best HMM Match : RVP (HMM E-Value=1.4)
Length = 230
Score = 27.1 bits (57), Expect = 9.0
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 7/56 (12%)
Frame = +1
Query: 322 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATA 468
TRL N+ + VS + GS++ GE R+ F+R +SF+ GL +EN+ E A
Sbjct: 87 TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLA 142
>SB_23813| Best HMM Match : RVT_1 (HMM E-Value=0.00037)
Length = 1283
Score = 27.1 bits (57), Expect = 9.0
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 7/56 (12%)
Frame = +1
Query: 322 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATA 468
TRL N+ + VS + GS++ GE R+ F+R +SF+ GL +EN+ E A
Sbjct: 343 TRLGCNITTSSQSVSQADGSSQLHVVGETRLSFTRADKSFSFEGLVVENLDVEVLA 398
>SB_8085| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 461
Score = 27.1 bits (57), Expect = 9.0
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 7/56 (12%)
Frame = +1
Query: 322 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATA 468
TRL N+ + VS + GS++ GE R+ F+R +SF+ GL +EN+ E A
Sbjct: 8 TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLA 63
>SB_7574| Best HMM Match : RVP (HMM E-Value=2.3)
Length = 253
Score = 27.1 bits (57), Expect = 9.0
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 7/56 (12%)
Frame = +1
Query: 322 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATA 468
TRL N+ + VS + GS++ GE R+ F+R +SF+ GL +EN+ E A
Sbjct: 187 TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLA 242
>SB_43706| Best HMM Match : RVP (HMM E-Value=1.4)
Length = 577
Score = 27.1 bits (57), Expect = 9.0
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 7/56 (12%)
Frame = +1
Query: 322 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATA 468
TRL N+ + VS + GS++ GE R+ F+R +SF+ GL +EN+ E A
Sbjct: 342 TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLA 397
>SB_22574| Best HMM Match : RVP (HMM E-Value=1.4)
Length = 382
Score = 27.1 bits (57), Expect = 9.0
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 7/56 (12%)
Frame = +1
Query: 322 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATA 468
TRL N+ + VS + GS++ GE R+ F+R +SF+ GL +EN+ E A
Sbjct: 239 TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLA 294
>SB_20170| Best HMM Match : RVT_1 (HMM E-Value=0.00014)
Length = 1212
Score = 27.1 bits (57), Expect = 9.0
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 7/56 (12%)
Frame = +1
Query: 322 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATA 468
TRL N+ + VS + GS++ GE R+ F+R +SF+ GL +EN+ E A
Sbjct: 352 TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLA 407
>SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 942
Score = 27.1 bits (57), Expect = 9.0
Identities = 26/116 (22%), Positives = 49/116 (42%)
Frame = -2
Query: 468 SGSLSNDVLKGKSSGSERPQDAAENADFSFSGTD*C*NSGNSQD*VESGADVADTTQMQG 289
SGS +N + KS + +P EN D + N+G+ D AD+ +
Sbjct: 19 SGSTTNVDVNSKSETASKPHIPTENYDLDDRLSL---NAGDDSDGCTKKADLTS----KN 71
Query: 288 AEVISLDVSHAAREVNDV*CTRRAPGASVAVTAERISRSQQFTDFIEQV*DHDVKD 121
+I D ++ ++ + SV + +R+S Q ++ + + D +VKD
Sbjct: 72 TTLIDKDAGSLTKDPSE----QDTNPESVFMAKDRVSAIQSLCEYEDSIEDGEVKD 123
>SB_1949| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 528
Score = 27.1 bits (57), Expect = 9.0
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -3
Query: 386 SPSAEPTDAETLGTA-RTKLSRVPT*LTRRKCRELKSSALTSVTRPEKLMMSDAP 225
S +A PT++ GT TK P+ T + RE + SVT PEK + P
Sbjct: 58 SNNAPPTESNKNGTKLTTKGDSSPSAYTLKVIRESLRAGSVSVTPPEKSPQTPLP 112
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,157,857
Number of Sequences: 59808
Number of extensions: 273772
Number of successful extensions: 847
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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