Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11j08r
         (762 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0168 - 1883380-1883594,1884572-1888325                           31   1.3  
10_01_0163 - 1850018-1850033,1850184-1850271,1850824-1854544           30   1.7  
01_03_0284 - 14595643-14595663,14595978-14596018,14596379-145967...    28   7.1  
01_03_0282 - 14580875-14580891,14582126-14585855                       28   7.1  

>10_01_0168 - 1883380-1883594,1884572-1888325
          Length = 1322

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 162 RVRLKPKQIKIMSYLNYLFPEGCKEVE 242
           R+R  PK +K M+ L +L+  GCK +E
Sbjct: 636 RLRRLPKDMKYMTSLRHLYTNGCKNLE 662


>10_01_0163 - 1850018-1850033,1850184-1850271,1850824-1854544
          Length = 1274

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +3

Query: 150 ECFRRVRLKPKQIKIMSYLNYLFPEGCKEVE 242
           +C+  VRL PK +K M+ L +L+  GC +++
Sbjct: 633 DCYNLVRL-PKDMKYMTSLRHLYTNGCSKLK 662


>01_03_0284 -
           14595643-14595663,14595978-14596018,14596379-14596732,
           14597023-14597494,14597524-14600001
          Length = 1121

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +3

Query: 165 VRLKPKQIKIMSYLNYLFPEGCKEVE 242
           +R  PK +K M+ L +L+  GC+++E
Sbjct: 634 LRCLPKNMKYMTSLRHLYTHGCEQLE 659


>01_03_0282 - 14580875-14580891,14582126-14585855
          Length = 1248

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +3

Query: 165 VRLKPKQIKIMSYLNYLFPEGCKEVE 242
           +R  PK +K M+ L +L+ +GC ++E
Sbjct: 636 LRCLPKNMKYMTSLRHLYTQGCTDLE 661


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,919,288
Number of Sequences: 37544
Number of extensions: 219515
Number of successful extensions: 330
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 330
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)