Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11j08r
         (762 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50071-3|CAA90407.1|  613|Caenorhabditis elegans Hypothetical pr...    31   0.89 
Z50071-2|CAA90406.1|  638|Caenorhabditis elegans Hypothetical pr...    31   0.89 
Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical pr...    31   0.89 
AF040644-5|AAD34647.1| 1032|Caenorhabditis elegans Hypothetical ...    29   3.6  
AF040653-6|AAB95032.1|  508|Caenorhabditis elegans F-box b prote...    28   6.3  
U40934-4|AAA81682.1|  873|Caenorhabditis elegans Vacuolar h atpa...    28   8.3  
AF024503-13|AAG24083.1|  347|Caenorhabditis elegans Hypothetical...    28   8.3  
AB055110-1|BAB62291.1|  873|Caenorhabditis elegans VHA-5 protein.      28   8.3  

>Z50071-3|CAA90407.1|  613|Caenorhabditis elegans Hypothetical
           protein T07D4.4c protein.
          Length = 613

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 147 LECFRRVRLKPKQIKIMSYLNYLFPEGCKEVEAKVLI 257
           +  FR +RLKP+ +K +  +N+ FP   +E    +L+
Sbjct: 208 ISSFRELRLKPEVLKALDTMNFQFPTRIQETALPLLL 244


>Z50071-2|CAA90406.1|  638|Caenorhabditis elegans Hypothetical
           protein T07D4.4b protein.
          Length = 638

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 147 LECFRRVRLKPKQIKIMSYLNYLFPEGCKEVEAKVLI 257
           +  FR +RLKP+ +K +  +N+ FP   +E    +L+
Sbjct: 233 ISSFRELRLKPEVLKALDTMNFQFPTRIQETALPLLL 269


>Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical
           protein T07D4.4a protein.
          Length = 1022

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 147 LECFRRVRLKPKQIKIMSYLNYLFPEGCKEVEAKVLI 257
           +  FR +RLKP+ +K +  +N+ FP   +E    +L+
Sbjct: 617 ISSFRELRLKPEVLKALDTMNFQFPTRIQETALPLLL 653


>AF040644-5|AAD34647.1| 1032|Caenorhabditis elegans Hypothetical
           protein H04J21.1 protein.
          Length = 1032

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 414 QLKYYLIINKSLLEVHVEHFNNII*QTKNYLI 319
           Q +  L +NK L++ H  H N++   TK YLI
Sbjct: 383 QAQSLLYVNKMLVDRHQVHGNSVFKHTKGYLI 414


>AF040653-6|AAB95032.1|  508|Caenorhabditis elegans F-box b protein
           protein 51 protein.
          Length = 508

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 524 LTIESRQMAFIETVVSLSRVFFQNIESVNL 613
           LT++ RQ      +++LS+   QNIE +NL
Sbjct: 458 LTLQDRQPLTSSQLMTLSQAMLQNIEKINL 487


>U40934-4|AAA81682.1|  873|Caenorhabditis elegans Vacuolar h atpase
           protein 5 protein.
          Length = 873

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 6/21 (28%), Positives = 14/21 (66%)
 Frame = +2

Query: 404 YFSCVLFYCCHSILMEFIFYW 466
           +  C+  Y C  I+++++F+W
Sbjct: 585 FMGCIFMYLCLQIILKWLFFW 605


>AF024503-13|AAG24083.1|  347|Caenorhabditis elegans Hypothetical
           protein F31F4.15 protein.
          Length = 347

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +2

Query: 557 ETVVSLSRVFFQNIESVNLYHISILSTNSF 646
           +T+  LSRV+ Q +E+++++H  I   + F
Sbjct: 194 DTISILSRVYAQTLENIHMWHTDIRDFDQF 223


>AB055110-1|BAB62291.1|  873|Caenorhabditis elegans VHA-5 protein.
          Length = 873

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 6/21 (28%), Positives = 14/21 (66%)
 Frame = +2

Query: 404 YFSCVLFYCCHSILMEFIFYW 466
           +  C+  Y C  I+++++F+W
Sbjct: 585 FMGCIFMYLCLQIILKWLFFW 605


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,775,836
Number of Sequences: 27780
Number of extensions: 247928
Number of successful extensions: 467
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)