Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11j08f
(613 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 144 7e-36
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 139 3e-34
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 137 1e-33
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 134 1e-32
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 127 1e-30
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 115 5e-27
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 82 7e-17
SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual 28 1.2
SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomy... 27 2.1
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 26 4.9
SPAC18G6.06 |||U3 snoRNP-associated protein Utp11|Schizosaccharo... 26 4.9
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce... 26 4.9
SPBC543.10 |||GET complex subunit |Schizosaccharomyces pombe|chr... 25 6.5
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M... 25 8.6
SPBC17D1.02 |||diphthamide biosynthesis protein |Schizosaccharom... 25 8.6
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 144 bits (350), Expect = 7e-36
Identities = 72/168 (42%), Positives = 106/168 (63%)
Frame = +1
Query: 109 IGIDFGNESCYIAVAKAGGIETIANDYSLRGTPSCVAFSQKNRILGVAAKNQMVTNMKNT 288
IGID G +AV + +E I ND R TPS VAF++ R++G AAKNQ N +NT
Sbjct: 9 IGIDLGTTYSCVAVWETANVEIIPNDQGARTTPSFVAFTETERLVGDAAKNQAAMNPRNT 68
Query: 289 VFGFKRLLGRKFSDPLVQKELKHFPFKVEQRSDGGIGIRVNYLNEDNVFTPEQITAMLLT 468
VF KRL+GR++ DP QK++KH+PFKV ++G I VNYL E FT ++I+AM+LT
Sbjct: 69 VFDAKRLIGRRYEDPETQKDIKHWPFKVID-NNGIPTIEVNYLGEKKQFTAQEISAMVLT 127
Query: 469 KLKDVAATALQTQINDCVISVPSYFTNAERXXXXXXXXXXXXXVLRLM 612
K+K+++ L ++ VI+VP+YF++++R VLR++
Sbjct: 128 KMKEISEAKLNKRVEKAVITVPAYFSDSQRAATKDAGAIAGLNVLRII 175
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 139 bits (336), Expect = 3e-34
Identities = 70/168 (41%), Positives = 101/168 (60%)
Frame = +1
Query: 109 IGIDFGNESCYIAVAKAGGIETIANDYSLRGTPSCVAFSQKNRILGVAAKNQMVTNMKNT 288
IGID G + +E IAND R TPS VAF+ R++G AAKNQ+ N NT
Sbjct: 5 IGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHNT 64
Query: 289 VFGFKRLLGRKFSDPLVQKELKHFPFKVEQRSDGGIGIRVNYLNEDNVFTPEQITAMLLT 468
+F KRL+GRKF DP VQ ++KH+PFKV + DG ++V Y E FTPE+I++M+L
Sbjct: 65 IFDAKRLIGRKFDDPEVQSDMKHWPFKVISK-DGKPVLQVEYKGETKTFTPEEISSMVLM 123
Query: 469 KLKDVAATALQTQINDCVISVPSYFTNAERXXXXXXXXXXXXXVLRLM 612
K+++ A L ++ D V++VP+YF +++R VLR++
Sbjct: 124 KMRETAEAYLGGKVTDAVVTVPAYFNDSQRQATKDAGLIAGLNVLRII 171
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 137 bits (331), Expect = 1e-33
Identities = 69/168 (41%), Positives = 103/168 (61%)
Frame = +1
Query: 109 IGIDFGNESCYIAVAKAGGIETIANDYSLRGTPSCVAFSQKNRILGVAAKNQMVTNMKNT 288
IGID G + +E IAND R TPS VAF+ R++G AAKNQ+ N NT
Sbjct: 5 IGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHNT 64
Query: 289 VFGFKRLLGRKFSDPLVQKELKHFPFKVEQRSDGGIGIRVNYLNEDNVFTPEQITAMLLT 468
+F KRL+GR+F+DP VQ ++KH+PFKV ++ DG I+V + E FTPE+I++M+L
Sbjct: 65 IFDAKRLIGRRFNDPEVQSDMKHWPFKVIEK-DGKPLIQVEFKGETKTFTPEEISSMVLL 123
Query: 469 KLKDVAATALQTQINDCVISVPSYFTNAERXXXXXXXXXXXXXVLRLM 612
K+++ A L ++ D V++VP+YF +++R VLR++
Sbjct: 124 KMRESAEAFLGGKVTDAVVTVPAYFNDSQRQATKDAGLIAGLNVLRII 171
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 134 bits (323), Expect = 1e-32
Identities = 68/170 (40%), Positives = 102/170 (60%)
Frame = +1
Query: 103 SVIGIDFGNESCYIAVAKAGGIETIANDYSLRGTPSCVAFSQKNRILGVAAKNQMVTNMK 282
+VIGID G +AV K G +E IAND R TPS VAF++ R++G AAKNQ +N +
Sbjct: 36 TVIGIDLGTTYSCVAVMKNGRVEIIANDQGNRITPSYVAFTEDERLVGEAAKNQAPSNPE 95
Query: 283 NTVFGFKRLLGRKFSDPLVQKELKHFPFKVEQRSDGGIGIRVNYLNEDNVFTPEQITAML 462
NT+F KRL+GRKF + + K++K FPF + + + + VN + FTPE+I+AM+
Sbjct: 96 NTIFDIKRLIGRKFDEKTMAKDIKSFPFHIVNDKNRPL-VEVNVGGKKKKFTPEEISAMI 154
Query: 463 LTKLKDVAATALQTQINDCVISVPSYFTNAERXXXXXXXXXXXXXVLRLM 612
L+K+K A L + V++VP+YF +A+R V+R++
Sbjct: 155 LSKMKQTAEAYLGKPVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVIRIV 204
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 127 bits (307), Expect = 1e-30
Identities = 66/170 (38%), Positives = 97/170 (57%)
Frame = +1
Query: 103 SVIGIDFGNESCYIAVAKAGGIETIANDYSLRGTPSCVAFSQKNRILGVAAKNQMVTNMK 282
+V+GIDFGN IAVA+ I+ I N+ S R TPS V++ +++R LG AAK+ +N +
Sbjct: 6 NVVGIDFGNSKTVIAVARNRAIDVIVNEVSNRSTPSLVSYGERSRFLGEAAKSAEASNFR 65
Query: 283 NTVFGFKRLLGRKFSDPLVQKELKHFPFKVEQRSDGGIGIRVNYLNEDNVFTPEQITAML 462
NTV KRL GR + DP ++ +F DG +G +V YLNE+ F+ Q+ A
Sbjct: 66 NTVGSLKRLAGRTYDDPEIKDIESNFISAKLTEVDGFVGAKVQYLNEETAFSNIQLIAAY 125
Query: 463 LTKLKDVAATALQTQINDCVISVPSYFTNAERXXXXXXXXXXXXXVLRLM 612
TK+K +A L ++D VIS+P++FT+ +R LRLM
Sbjct: 126 FTKIKAIAEAELIGSVSDVVISIPAWFTDIQRRALLEAANIAGLNPLRLM 175
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 115 bits (277), Expect = 5e-27
Identities = 59/170 (34%), Positives = 99/170 (58%), Gaps = 1/170 (0%)
Frame = +1
Query: 106 VIGIDFGNESCYIAVAKAGGIETIANDYSLRGTPSCVAFSQKN-RILGVAAKNQMVTNMK 282
VIGID G + +A+ + + IAN R TPS VAF++ R++GV+AK Q V N +
Sbjct: 52 VIGIDLGTTTSCLAIMEGQTPKVIANAEGTRTTPSVVAFTKDGERLVGVSAKRQAVINPE 111
Query: 283 NTVFGFKRLLGRKFSDPLVQKELKHFPFKVEQRSDGGIGIRVNYLNEDNVFTPEQITAML 462
NT F KRL+GR+F +P VQ+++K P+K+ + S+G + ++P QI +
Sbjct: 112 NTFFATKRLIGRRFKEPEVQRDIKEVPYKIVEHSNGDAWLEA----RGKTYSPSQIGGFI 167
Query: 463 LTKLKDVAATALQTQINDCVISVPSYFTNAERXXXXXXXXXXXXXVLRLM 612
L+K+++ A+T L + + V++VP+YF +++R VLR++
Sbjct: 168 LSKMRETASTYLGKDVKNAVVTVPAYFNDSQRQATKAAGAIAGLNVLRVV 217
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 81.8 bits (193), Expect = 7e-17
Identities = 55/174 (31%), Positives = 83/174 (47%), Gaps = 4/174 (2%)
Frame = +1
Query: 103 SVIGIDFGNESCYIAVAKAGGIETIANDYSLRGTPSCVAFSQKNRILGVAAKNQMVTNMK 282
+VIGI FGN++ IA + G + +AN+ R PS +++ GV A+ Q+V N
Sbjct: 25 TVIGISFGNQNSSIAFNRDGKTDVLANEEGNRQIPSILSYHGDQEYHGVQARGQLVRNAD 84
Query: 283 NTVFGFKRLLGRKFSDPLVQKELKHFPFKVEQRSDGGIGIRVNYLNE----DNVFTPEQI 450
N+V F+ LLG K D L + V G I V E + + T +
Sbjct: 85 NSVTNFRDLLG-KSHDELTLHHCHYSANPVNVEGQIGFKITVQEDEESDPKEKILTAHEA 143
Query: 451 TAMLLTKLKDVAATALQTQINDCVISVPSYFTNAERXXXXXXXXXXXXXVLRLM 612
+ L +L + A L T++N CV+SVP YFT+A+R VL+L+
Sbjct: 144 SVRHLRRLTESAEDFLGTKVNGCVMSVPVYFTDAQRKALESAANEAGLPVLQLI 197
>SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 268
Score = 27.9 bits (59), Expect = 1.2
Identities = 22/81 (27%), Positives = 34/81 (41%)
Frame = +1
Query: 124 GNESCYIAVAKAGGIETIANDYSLRGTPSCVAFSQKNRILGVAAKNQMVTNMKNTVFGFK 303
GN Y ++ GG I D L+ P + + +L + N V+ ++FG
Sbjct: 7 GNYHSYYSMR--GGTSII--DPRLKCLPDSLFYEAS--VLDIGCNNGTVSAQIASIFGAS 60
Query: 304 RLLGRKFSDPLVQKELKHFPF 366
+LG L+QK KH F
Sbjct: 61 FVLGLDIDHVLIQKARKHLEF 81
>SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 318
Score = 27.1 bits (57), Expect = 2.1
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Frame = +1
Query: 73 ENLSITMAAMSVIGIDFGN--ESCYIAVAKAGGIETIANDYSLRGTPSCVAFSQKNRILG 246
E + I + +S++G ++ + + Y + K GG+ +A S S F+++ LG
Sbjct: 218 ETVDIAVFCLSLMGTNWQSFLKEAY-RILKVGGLLWVAEIKSRFSDKSGEVFAKELPKLG 276
Query: 247 VAAKNQMVTNMKNTVFGFKRL 309
K+ + N T+F FK++
Sbjct: 277 FETKSIQLQNKMFTLFEFKKV 297
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 459 VVDKTKRCCSNSFTDSNQRLCDICSQLF 542
V D KR N F D + R+C I + +F
Sbjct: 889 VKDSIKRLGDNKFEDKSLRICTIPNSIF 916
>SPAC18G6.06 |||U3 snoRNP-associated protein
Utp11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 25.8 bits (54), Expect = 4.9
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Frame = +1
Query: 343 KELKHF-PFKVEQRSDGGIGIRVNYLNED----NVFTPEQITAMLLTKLKDVAATAL 498
KE K F P + Q +D +G N + +D N T + + L +KLK+ AAT L
Sbjct: 144 KEAKSFNPAEFFQTTDDLVGRTENRVKKDQIENNELTNQPFSGKLHSKLKEKAATEL 200
>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 568
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 406 VNYLNEDNVFTPEQITAMLLTKLKDVAATALQTQIN 513
+ YLNE N+ TPE + + A + QIN
Sbjct: 417 IKYLNEHNILTPEGEQHKFGDDIAEAAERKMTDQIN 452
>SPBC543.10 |||GET complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 171
Score = 25.4 bits (53), Expect = 6.5
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 364 FKVEQRSDGGIGIRVNYLNEDNVFTPEQITAMLLTKLKDVAATALQTQ 507
F ++ DG I V+ N ++ ++I LLT K++ AT+ Q Q
Sbjct: 21 FAKKRTIDGAYRIYVSVSNNKDLKKNKEILEQLLTVKKELNATSSQDQ 68
>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 757
Score = 25.0 bits (52), Expect = 8.6
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +1
Query: 298 FKRLLGRKFSDPLVQKELKHFPFKVEQRSDGGIGIRVNYLNEDNVFTP 441
F+ L G+K + P+ + L EQ D G+ I ++ N N+F P
Sbjct: 564 FQMLNGKKIAGPIPKTNLTRSLSYSEQSFDSGVSI-LSCQNFYNIFHP 610
>SPBC17D1.02 |||diphthamide biosynthesis protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 503
Score = 25.0 bits (52), Expect = 8.6
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -3
Query: 131 SLPKSIPMTDIAAIVIDKFSYFTEKILNYKYLLIN*VIS 15
SLPKS+ + D+ + I S IL Y L+N +S
Sbjct: 204 SLPKSLSLQDMTLLYIGPDSPTLSSILMSHYSLVNQFLS 242
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,531,697
Number of Sequences: 5004
Number of extensions: 54236
Number of successful extensions: 127
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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