Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11j08f
         (613 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    25   0.77 
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        25   0.77 
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    22   5.4  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   7.2  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   7.2  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   7.2  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   9.5  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   9.5  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 24.6 bits (51), Expect = 0.77
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 335 RGSENFLPRSRLKPNTVFFILVTIWFLAATP 243
           R SEN    +  K   V  + +++WF+A TP
Sbjct: 263 RSSENQNTSAECKLAKVALMTISLWFMAWTP 293


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 24.6 bits (51), Expect = 0.77
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 335 RGSENFLPRSRLKPNTVFFILVTIWFLAATP 243
           R SEN    +  K   V  + +++WF+A TP
Sbjct: 13  RSSENQNTSAECKLAKVALMTISLWFMAWTP 43


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 102 HSSHCDRQ 79
           H SHCDRQ
Sbjct: 39  HCSHCDRQ 46


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 408 DSYSNTAIRPLFNLEREMF*FFLNKRV 328
           D + NTA+   FN+  +M+ + L+  V
Sbjct: 120 DVFYNTAVWARFNVNEQMYLYALSVAV 146


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 408 DSYSNTAIRPLFNLEREMF*FFLNKRV 328
           D + NTA+   FN+  +M+ + L+  V
Sbjct: 120 DVFYNTAVWARFNVNEQMYLYALSVAV 146


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 321 IFRPSCSKRIKTFPF 365
           IFR SC   ++ FPF
Sbjct: 126 IFRSSCDIDVEFFPF 140


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 6/17 (35%), Positives = 9/17 (52%)
 Frame = -3

Query: 278 ILVTIWFLAATPNIRFF 228
           +L  +W +   P  RFF
Sbjct: 640 VLTLVWMIIEPPGTRFF 656


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 6/17 (35%), Positives = 9/17 (52%)
 Frame = -3

Query: 278 ILVTIWFLAATPNIRFF 228
           +L  +W +   P  RFF
Sbjct: 730 VLTLVWMIIEPPGTRFF 746


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,022
Number of Sequences: 438
Number of extensions: 3737
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)