Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11j07f
(582 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc... 111 9e-26
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac... 106 2e-24
SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3 |Schizosacc... 41 1e-04
SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2 |Schizosacc... 35 0.008
SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyc... 32 0.053
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 31 0.093
SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual 28 0.87
SPAC30D11.05 |aps3||AP-3 adaptor complex subunit Aps3 |Schizosac... 27 2.0
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 27 2.6
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 27 2.6
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom... 26 3.5
SPCC320.11c ||SPCC330.18|RNA-binding protein|Schizosaccharomyces... 26 3.5
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce... 26 3.5
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi... 26 3.5
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm... 26 3.5
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po... 26 4.6
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc... 26 4.6
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha... 25 6.1
SPBC3H7.15 |hhp1||serine/threonine protein kinase Hhp1|Schizosac... 25 8.1
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 25 8.1
SPCC1235.07 |fta7|sma7, cnl3|Sim4 and Mal2 associated |Schizosac... 25 8.1
>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 111 bits (266), Expect = 9e-26
Identities = 55/137 (40%), Positives = 87/137 (63%), Gaps = 2/137 (1%)
Frame = +1
Query: 148 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRV--NVIHARQQVRSPVTNIARTSFFHI 321
M +FV N KG+V+ISR YR DI + V+ F + + Q +P ++ +I
Sbjct: 1 MASAIFVLNLKGKVIISRDYRADIPMSVVEKFLPLKSEVEEEQGFSTPCLTHEGINYIYI 60
Query: 322 KRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDF 501
+++L A++K N +A + FL K+ DV YF ++ EE+I++NFVL+YELLDEI+DF
Sbjct: 61 HHNDVYLLALSKMNSDAMEMLVFLRKMADVFIDYFKELQEESIRDNFVLVYELLDEIMDF 120
Query: 502 GYPQNSDTGVLKTFITQ 552
G+PQ ++T +L+ +ITQ
Sbjct: 121 GFPQTTETKILQEYITQ 137
>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 446
Score = 106 bits (255), Expect = 2e-24
Identities = 46/129 (35%), Positives = 81/129 (62%)
Frame = +1
Query: 148 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKR 327
MI GLF++N KG+ LI + +R D+ ++ + FRV ++ R P+ +I +++ + K
Sbjct: 1 MISGLFIFNLKGDTLICKTFRHDLKKSVTEIFRVAIL-TNTDYRHPIVSIGSSTYIYTKH 59
Query: 328 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGY 507
++++ A+TK N N +V EFL +I + YFGK++E +K+N I+ELLDE++D+G
Sbjct: 60 EDLYVVAITKGNPNVMIVLEFLESLIQDLTHYFGKLNENTVKDNVSFIFELLDEMIDYGI 119
Query: 508 PQNSDTGVL 534
Q ++ L
Sbjct: 120 IQTTEPDAL 128
>SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 425
Score = 41.1 bits (92), Expect = 1e-04
Identities = 16/72 (22%), Positives = 39/72 (54%)
Frame = +1
Query: 331 NIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGYP 510
++ L T + + + + +I+DV++++FG + ++ N +I +LL E++D+GY
Sbjct: 66 DVRLCIPTTCDTEPLYIHDIMRRIVDVVKTFFGGFNASKVEKNVCVIVQLLAEMIDYGYA 125
Query: 511 QNSDTGVLKTFI 546
+ L+ +
Sbjct: 126 TCMEPNALQDIV 137
>SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 35.1 bits (77), Expect = 0.008
Identities = 25/119 (21%), Positives = 54/119 (45%), Gaps = 3/119 (2%)
Frame = +1
Query: 148 MIGGLFVYNHKGEVLISRVYR--DDIGRNAVDAFRVNVIHAR-QQVRSPVTNIARTSFFH 318
MI + + N G+ +S+ Y DD + + A +I R Q+ ++ + +
Sbjct: 1 MIQFILIQNRHGKNRLSKYYVPFDDDEKVRLKARIHQLISQRNQKFQANFLEWENSKLVY 60
Query: 319 IKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEIL 495
+ A ++ N + E + ++++ S+FG + E ++ NF + +LDEI+
Sbjct: 61 RRYAGLYFCFCVDSTDNDLAILEMIHFFVEILDSFFGNVCELDLIFNFYKVSAILDEII 119
>SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 240
Score = 32.3 bits (70), Expect = 0.053
Identities = 27/132 (20%), Positives = 54/132 (40%), Gaps = 2/132 (1%)
Frame = +1
Query: 166 VYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTS--FFHIKRANIW 339
+ N G+ +ISR +R+ + R V++ ++ A +S T + + F + ++
Sbjct: 8 IVNRGGKAIISRQFRE-MSRVRVESL-LSSFPALVSEKSQNTTVESDNVRFVYQPLDELY 65
Query: 340 LAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGYPQNS 519
+ +T N + L + V+ S + E I I+ DE GY N
Sbjct: 66 IVLITNLQSNILQDIDTLHLLSQVVTSICSSLEEREILEYAFEIFTAFDEATSLGYRDNV 125
Query: 520 DTGVLKTFITQQ 555
+KT++ +
Sbjct: 126 SLTQIKTYLEME 137
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 31.5 bits (68), Expect = 0.093
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = -3
Query: 517 NSEGNQSPRSHQATHRSEQSYS*CSLQKSCQNTIASHQ*SSTGTQIPWPRSHFAL 353
+S + RS AT +S++S S + S T S+ ++ TQ+ WP +H L
Sbjct: 719 DSGSRRVTRSQNATSQSQESGS--EIGSSIAGTAGSYNVGTSNTQLSWPSTHSTL 771
>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 28.3 bits (60), Expect = 0.87
Identities = 12/46 (26%), Positives = 29/46 (63%)
Frame = +1
Query: 316 HIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIK 453
+I+ N + + +++ + A++ E +++DV QS+ G + EEN++
Sbjct: 414 NIEITNPIIVSPVERSRSQALLNEIQTRVLDVRQSHGGVVLEENVR 459
>SPAC30D11.05 |aps3||AP-3 adaptor complex subunit Aps3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 165
Score = 27.1 bits (57), Expect = 2.0
Identities = 21/127 (16%), Positives = 55/127 (43%), Gaps = 8/127 (6%)
Frame = +1
Query: 148 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPV------TNI--AR 303
MI +F++N+KG+ +++ Y ++ + I+A R P +N+ +
Sbjct: 1 MIYAVFIFNNKGKPRLTKFYTPI--DESIQQKLIGDIYAAVSTRPPTACNFLESNLIAGK 58
Query: 304 TSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELL 483
+ + A ++ V + + + + + ++ + F + E ++ F I+ +L
Sbjct: 59 NRIIYRQYATLYFVFVVDEGESELGILDLIQVFVEALDRCFNNVCELDLVFKFQEIHAIL 118
Query: 484 DEILDFG 504
E++ G
Sbjct: 119 AEVVSGG 125
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 26.6 bits (56), Expect = 2.6
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 90 SLNSNYIETNFERV*GLTYNDRRLVRLQP 176
S + N +E+N E+V GL ND ++ L+P
Sbjct: 77 SSSLNTMESNIEKVNGLFPNDNSVIALKP 105
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 26.6 bits (56), Expect = 2.6
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +1
Query: 415 QSYFGKISEENIKNNFVLIYELLDEILDFGYPQNSDTGVLKTFITQQ 555
+ + KI EE +K N +L YE D +S ++KTF Q
Sbjct: 952 KDFVTKIEEETLKENPLLFYEYRKASSDMRVLMDSQFLMMKTFARLQ 998
>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1188
Score = 26.2 bits (55), Expect = 3.5
Identities = 23/102 (22%), Positives = 48/102 (47%), Gaps = 11/102 (10%)
Frame = +1
Query: 238 AFRVNVIHARQQVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQ 417
+ RVN+ + +S +N + T+ +H++ + + +A+VFEF K +
Sbjct: 839 SIRVNIAGVKITAKSSTSNSSSTAEYHVRSRHAVIP--VNNRYRSAVVFEF-RKQLQRKH 895
Query: 418 SYFGKI----SEENIKNNF-VLIY------ELLDEILDFGYP 510
+ F + E+N++ N V I+ +L ++DF +P
Sbjct: 896 NVFAMVWLVDLEDNVEQNIRVPIFTSSKPAHVLQNMIDFDHP 937
>SPCC320.11c ||SPCC330.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 180
Score = 26.2 bits (55), Expect = 3.5
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +1
Query: 409 VMQSYFGKISEENIKNNFVLIYELLDEILDFGYPQNS 519
V++++ G+I+++ ++ V+IY + D L FG S
Sbjct: 113 VLKAHVGRITDDTPQHQGVVIYSMNDTPLGFGVTARS 149
>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 715
Score = 26.2 bits (55), Expect = 3.5
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = -1
Query: 354 CDCCQPNICTLDMEERCACNVGNR 283
C C +C L +E C C++ N+
Sbjct: 675 CSCKSITVCPLHIEYLCKCDLSNK 698
>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
reductase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1053
Score = 26.2 bits (55), Expect = 3.5
Identities = 9/40 (22%), Positives = 25/40 (62%)
Frame = -1
Query: 576 LGGRXDALLSDECLQDPSIRILRVTKVQDLIKQLIDQNKV 457
+ GR +++++ + +++ + T V+DL+K +D+N +
Sbjct: 854 IDGRGKSVIAEAIIPGDAVKSVLKTTVEDLVKLNVDKNLI 893
>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1292
Score = 26.2 bits (55), Expect = 3.5
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = -3
Query: 538 SSGPQYQNSEGNQSPRSHQATHRSEQSYS*CSLQKSCQNTIASHQ*SSTGTQIP 377
SS P +SE NQ P S Q +Y+ ++ S + SS+GT P
Sbjct: 10 SSRPPSVHSERNQKPSSSQFLGVPSSNYNQRENSSRSGSSTISREPSSSGTMYP 63
>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 320
Score = 25.8 bits (54), Expect = 4.6
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 272 RCDHLLPTLHAHLSSISSVQIFGWQQSQSKM*TR 373
RC + +L H+S + SV + W Q++ TR
Sbjct: 51 RCSGVHRSLGVHVSRVKSVDLDSWTDEQTENMTR 84
>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 878
Score = 25.8 bits (54), Expect = 4.6
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +1
Query: 64 YVKFLKGCNR*IAITLKPILKECEASPTMIGGLFVYNHKGEVLISRVYRDDIGRNAVD 237
+V ++ G R I + L P+L PT+ +NH G++ + R + G N+ D
Sbjct: 737 HVSYVTGVIRSIDLQL-PVLLSKFMKPTIFDSYDFFNHWGQMGVEREAQLTFGLNSKD 793
>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 720
Score = 25.4 bits (53), Expect = 6.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 275 CDHLLPTLHAHLSSISSVQIF 337
CD L+ LHA L SSV +F
Sbjct: 118 CDRLVRQLHASLEDASSVGLF 138
>SPBC3H7.15 |hhp1||serine/threonine protein kinase
Hhp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 365
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 294 HCTHIFLPYQACKYLAGSSHKAKCERGHGI 383
H TH+ +PY+ K L G++ A GI
Sbjct: 161 HKTHLHIPYRENKNLTGTARYASINTHLGI 190
>SPAC6C3.06c |||P-type ATPase, calcium
transporting|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1033
Score = 25.0 bits (52), Expect = 8.1
Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Frame = +1
Query: 211 DDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKRANIWLAAVT-KQNVNAAMVFE 387
+D+G V + ++ Q S + + F H+ R +W ++ KQ AM
Sbjct: 773 NDVGMIQVANVGIGIVGKEGQQASLAADYSVKEFSHVSRLLLWHGRISYKQTSKLAMFVI 832
Query: 388 FLLKIIDVMQSYFGKIS 438
+I V Q + IS
Sbjct: 833 HRGLLISVCQVVYSVIS 849
>SPCC1235.07 |fta7|sma7, cnl3|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 244
Score = 25.0 bits (52), Expect = 8.1
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -1
Query: 525 SIRILRVTKVQDLIKQLIDQNKVILDVLFRNLAKIRLHHINDLQQELK 382
++ + R K L QL+ N + L+ +L HIN LQQELK
Sbjct: 71 NLPVPRKRKESILFSQLLSSNMQLEQQLYSDL-----DHINVLQQELK 113
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,420,990
Number of Sequences: 5004
Number of extensions: 49874
Number of successful extensions: 148
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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